Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c19
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot...    33   0.27 
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...    33   0.27 
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    31   0.81 
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont...    30   1.4  
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr...    29   4.3  
At2g23080.2 68415.m02751 casein kinase II alpha chain, putative ...    29   4.3  
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    29   4.3  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   5.7  
At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthet...    28   7.6  
At1g28610.2 68414.m03523 GDSL-motif lipase, putative similar to ...    28   7.6  
At3g44230.1 68416.m04745 hypothetical protein                          27   10.0 

>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 61

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 552 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 656
           R R   KLL+ID++F++   V   +DLC  PG ++
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWS 56


>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 552 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 656
           R R   KLL+ID++F++   V   +DLC  PG ++
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWS 56


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 552 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPL 683
           R R   KLL++D K+ +       LDLC  PG +    +   P+
Sbjct: 23  RSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66


>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
           contains weak similarity to cytoplasmic linker protein
           CLIP-170 (GI:2905649) [Gallus gallus]
          Length = 588

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +2

Query: 107 IEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYN 286
           +E+      + W E ++N   N P D     +  K D+E+         + +  +L    
Sbjct: 294 VELEQSKSRMVWLEALVNKLQNNPADLENHEILLK-DYESLRRGESNEMDEEVSSLRCEV 352

Query: 287 ERIRAALNRPARFNDQTTNV 346
           ER+RAAL    +  DQ  NV
Sbjct: 353 ERLRAALEASDK-KDQEGNV 371


>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
           protein bHLH protein, Arabidopsis thaliana,
           PATCHX:E255557
          Length = 589

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 612 VDTFLDLCGGPGEFANYTMSLNP 680
           VDTF +   G GEF ++  +LNP
Sbjct: 246 VDTFFNFNNGGGEFGSWAFNLNP 268


>At2g23080.2 68415.m02751 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 307

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 522 SKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 644
           S++F+ K      RC  K+L+  KK  + R +    +LCGGP
Sbjct: 46  SEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGP 87


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 522 SKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 644
           S++F+ K      RC  K+L+  KK  + R +    +LCGGP
Sbjct: 46  SEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGP 87


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 332 DR*IERVC*EQLLFSRCTLLKFLFLNCTQSVYCSRNFQNR 213
           DR +E    E L F + +L+KFL  N  + V+C+R  + R
Sbjct: 312 DRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGR 351


>At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthetase
           B / P5CS B (P5CS2) identical to SP|P54888
          Length = 726

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 185 NTFRTMFQKADFENFDYNTPIVYNLKTKTLTMY-NERIRAALNRP 316
           N   T+    D E   +   ++Y L+TK +T+Y   R  A LN P
Sbjct: 544 NAMETLLVHKDLEQNGFLDDLIYVLQTKGVTLYGGPRASAKLNIP 588


>At1g28610.2 68414.m03523 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains Pfam
           profile: PF00657 Lipase/Acylhydrolase with GDSL-like
           motif
          Length = 383

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 161 VANNTPL--DNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQ 334
           V  N PL    T+ T++Q ++ E +D  T  +  L   +   YNE+++A LNR ++    
Sbjct: 217 VPGNFPLGCSATYLTLYQTSNKEEYDPLTGCLTWLNDFS-EYYNEKLQAELNRLSKL--- 272

Query: 335 TTNVNIAY 358
             +VNI Y
Sbjct: 273 YPHVNIIY 280


>At3g44230.1 68416.m04745 hypothetical protein 
          Length = 204

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 248 VYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 358
           VYNL   TL M +++I AA N+P  FN Q  N  + +
Sbjct: 141 VYNLNI-TLLMKHKQI-AANNKPGHFNVQCRNFTLVF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,339
Number of Sequences: 28952
Number of extensions: 328535
Number of successful extensions: 845
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)