Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5c07
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 1.1
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 28 1.5
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 2.6
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 27 3.4
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.5
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 26 4.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 6.0
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 6.0
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 7.9
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 7.9
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 7.9
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 41 SQTPTAVIWRRSNTHGW-KTTNPAEERIKLSL 133
S P++++ R S+TH W K TN + E + L L
Sbjct: 619 SSLPSSLLNRGSSTHSWEKLTNASTEEVMLPL 650
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 621 RVSPFAARKFPIDVDTIK-KFPHLQKFLNRLYKNVSFFNVVHEIERVR 481
R P + F ++ TI+ +PH+ ++L RLY F+ + + ++
Sbjct: 239 RFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIK 286
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 578 STSIGNFRAAKGLTRRWAMRSVTPKHTFCCWMSCA 682
S ++G+ G T W M ++PK T+ + A
Sbjct: 426 SQNVGDIEIGLGNTNSWKMCGISPKSTYAIYFEVA 460
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 597 KFPIDVDTIKKFPHLQKFLNRLYKNVSFFNVVHEIER 487
K+ I D IKKF +K L N F+ +H I +
Sbjct: 410 KYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPK 446
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 347 AHGSWMATLKSSRPLHDRCRASKL 276
A +W L SRPL DR A+KL
Sbjct: 306 AIANWTMPLAHSRPLQDRFNAAKL 329
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
Frame = -3
Query: 546 FLNRLYKNVSFFNV---VHEIE 490
FL+++Y+NVS FNV +H+IE
Sbjct: 37 FLSKIYENVSNFNVPRKLHDIE 58
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 306 PARSLQ-SFKTSGYCFEGVVYSIATA 232
P + L+ +F+ G CF+G + +IATA
Sbjct: 83 PVKELELNFEIKGICFDGKLLAIATA 108
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 525 NVSFFNVVHEIERVRQS 475
N +F N VHE+ER+R+S
Sbjct: 561 NRNFANYVHEVERLRES 577
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 243 WNKRRPQNNTRKF*SSATIVQGTRRFQSCHPRSVGRRTKTPKGRVRLERTVQRQFWTIDG 422
W++ +PQ R+ S+TI ++S +KT G + LE +Q
Sbjct: 10 WSQYKPQETQRRLSRSSTITPSVSEYRSGF-------SKTAFGNIELEEIPDKQ------ 56
Query: 423 GEISKPTS--KNSSFNRRLD 476
G I++ TS +++S+ + LD
Sbjct: 57 GNITRATSNLESNSYPKALD 76
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = -2
Query: 220 NRTTSAINLARELCLRESCARTHPTRQ-----STQRQFYPLFCRVCCFPAMCIRAAPDD 59
N+ + INL LC+ SC HPT Q S Q + C C + PD+
Sbjct: 232 NQAINTINLL--LCIAVSCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDE 288
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 466 GGWTLSDPFYF--MHDVEKRNVFVES-VKEFLQVWKFFDGVDV 585
G + +D F F +V RNV VKE +++++ + G+DV
Sbjct: 572 GSYQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVYAGIDV 614
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 611 PLPPGNSQSTSTPSKN 564
PLPP N QS S+ S+N
Sbjct: 250 PLPPSNVQSNSSSSEN 265
>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 383 QADTPFWGFCTAAHGSWMATLKSSR-PLHDRCRASKL 276
+A W C AA+G WM R L+ R SKL
Sbjct: 49 EAGFAVWSRCEAANGEWMEADNEDRCRLYQIYRESKL 85
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 332 STIRGPPYKNPKRACPLGTNRTKAI 406
+TIR PPYK K +C N +
Sbjct: 127 NTIRSPPYKVKKESCHTEINNVSNV 151
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 1 LRPAD*SDPVLVKIADTDGGHLAPLEYTW 87
L P + DP + D D + LEYTW
Sbjct: 462 LEPKELEDPNFCRKTDLDSPYSLYLEYTW 490
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 395 YGSFQADTPFWGFCTAAHGSWMATLKSSRPLHDRC 291
+GS+ T W HG + TL + P+ + C
Sbjct: 75 HGSYLVGTNLWIIMDYCHGGSVRTLMEAGPISEPC 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,274
Number of Sequences: 5004
Number of extensions: 73427
Number of successful extensions: 276
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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