Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5c07
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 34 0.12
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 34 0.12
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 34 0.12
10_08_0007 + 14044844-14045767 33 0.29
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 1.5
01_03_0102 - 12565917-12566258 29 2.7
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 29 4.7
02_02_0402 - 9852407-9853519 29 4.7
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 28 6.2
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 28 6.2
11_04_0234 + 15187065-15188241,15188316-15188494 28 8.2
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 520 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 365
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 520 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 365
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 520 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 365
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>10_08_0007 + 14044844-14045767
Length = 307
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +1
Query: 427 KLANPHLKILPSIGGWTLSD-PFYF-MHDVEK-RNVFVESVKEFLQVWKFFDGVDVDWE 594
K +NP++++ S+GG T++D P +F + V+ N VES+ +Q DG+D+D+E
Sbjct: 97 KQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD-NNLDGIDIDYE 154
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 579 DTIKKFPHLQKFLNRLYKNVSFFNVVHEIERVRQS 475
DT++ F LQ +R K ++F ++VH I R+ Q+
Sbjct: 143 DTMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQT 177
>01_03_0102 - 12565917-12566258
Length = 113
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 565 FFDGVDVDWEFPGGKGANPSLG 630
F+ G +++W FPG G P +G
Sbjct: 55 FYPGPNINWVFPGPNGVTPQVG 76
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 399 FVRFVPSGHALLGFLYGGPRIVDGNFEIFASPARSLQSFKTSGYCFEGVVYSIATADG 226
F VP H + +Y R +G+F A+PA L + K GY + V + +A+G
Sbjct: 391 FAEVVPPKHRTM--IYAFDRAFEGSFASLAAPAVGLVTEKIYGYDSKTVNLANGSAEG 446
>02_02_0402 - 9852407-9853519
Length = 370
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = -1
Query: 647 ASRSASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTKTFLFSTSCMK*NGSDRVQP 468
+S SA +DGL PP + +T+T SK ++ S ST + + + + P
Sbjct: 131 SSSSAVAADGLKLKPPPEAAATATSSKKRNSGPES--SSTASSKRPKTVHRQQNKSPLPP 188
Query: 467 PIEGRIFRCGFANFAAINCPKLP 399
P R R A FAAI P P
Sbjct: 189 PPPKRAAR---ARFAAIPLPPPP 208
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 100 KPGRREDKIVAAYFVEWGVYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 258
+PG RE + + V RS P+DK L ++ + GDG NDA
Sbjct: 665 RPGVRE-AVATCHAAGINVMARSLPLDKHTLVTNLRGMFNEVVAVTGDGTNDA 716
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 638 SASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTK 525
SASP+ P P +S S+++ + H +S+ ++TK
Sbjct: 174 SASPASSATPTPTASSSSSTSAAPFAHPSPSSVLEATK 211
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 517 RNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANPSLGD 633
R F+ S E + FDG+D+ W FP + +LGD
Sbjct: 139 RRAFINSSIELARA-NGFDGLDLAWRFPATQLDMENLGD 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,796,752
Number of Sequences: 37544
Number of extensions: 520468
Number of successful extensions: 1792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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