Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5c05
(253 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 87 3e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 28 0.22
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.38
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 0.88
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 24 2.7
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 24 2.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 24 2.7
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 23 4.7
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 23 4.7
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 23 4.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 4.7
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 6.2
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 23 6.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 8.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 23 8.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 23 8.2
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 87.4 bits (207), Expect = 3e-19
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +3
Query: 42 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 194
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 27.9 bits (59), Expect = 0.22
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 206 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 114
++S+ L +P TP S +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.38
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 176 SPVTPLSVISNSVSCAHPYPLRNGS 102
+P TP++V S++V+ AH Y GS
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHGGS 1006
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 0.88
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 164 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 24
P +I +S S HP PL +G VL + + NNK + + SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 62 KRLMGRHFEQSSCQNKVKE 6
KRL+GR F++ Q +KE
Sbjct: 118 KRLIGRRFKEPEVQRDIKE 136
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.2 bits (50), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 238 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 140
YRVFI LHL A +FVL + L +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 2.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +3
Query: 90 LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 185
+K+ +P+P+W ++ G + W R K
Sbjct: 23 VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 4.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 191 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 60
+++ + TP +I+ + H L S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 KTFIIKRKLAKKLKQNRPIPQW 119
+T +K+KL K NRP+P W
Sbjct: 18 RTITVKQKLGK----NRPLPGW 35
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 23.4 bits (48), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 98 LFQLFGQFALNNKRLMGRHFEQSSCQNKVK 9
+F F + LN K + HF SSCQ++ K
Sbjct: 32 IFARFKFYPLN-KIVNYNHFHSSSCQSEAK 60
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 4.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 46 RPIRRLLLSANWPKS*NKTD 105
RP++ +L N PKS K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 92 QLFGQFALNNKRLMGRHFEQSSCQNKVK 9
Q+ Q +++K LMG H E + N ++
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDIQ 428
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.0 bits (47), Expect = 6.2
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +3
Query: 84 KKLKQNRPIPQWVRMRTGNTIRYNAKRR 167
+K++ +P PQW++++ + + K R
Sbjct: 76 EKMEVPKPTPQWMKLKDEGKLGKHRKNR 103
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 161 LSVISNSVSCAHPYPL 114
L++++ S C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 22.6 bits (46), Expect = 8.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 220 LHLTHSQAYNLSFVLLQ*RLLALYRIVFPV 131
LH+ H + Y +S +L + + Y+++ P+
Sbjct: 73 LHIGHVRVYTISDILSRYYRMKGYKVIHPM 102
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 229 FIRLHLTHSQAYNLSFVL 176
FI+L T A+NL FVL
Sbjct: 160 FIKLFYTFQDAHNLYFVL 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,019
Number of Sequences: 5004
Number of extensions: 16317
Number of successful extensions: 60
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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