Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       29   0.026
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.18 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   3.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   9.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 0.026
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 332 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 192
           CPKC F+T  +  +  ++  H        ++C  D+  +N    N+H
Sbjct: 233 CPKCPFITEYKHHLEYHLRNHAGSKPFQCNKC--DYTCVNKSMLNSH 277


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 324 VLFCDVVRSERG*IHRNA*KF*HK 253
           ++ CD VRSE   + +NA K  HK
Sbjct: 254 IIMCDCVRSEASKVVKNAQKLRHK 277


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 268 LCISMYSATLTSD 306
           LC++MY  +LT D
Sbjct: 264 LCLTMYKLSLTED 276



 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 FVLKFLCISMYSATLTSD 306
           F+L F CIS+    +++D
Sbjct: 169 FILAFACISIAYTNVSTD 186


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -3

Query: 429 LVKKY*HVAINHTTFQEYKQSQQKAFRSLCSVMS 328
           L++K+  V +    ++  K  ++K + ++C++MS
Sbjct: 288 LIEKWSRVEMALDNWKNDKSLKRKFYLTICTIMS 321


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 428 W*KNIDMLRSIIRRFKST 375
           W K++ + + I+  FKST
Sbjct: 15  WGKSLSIPQQILNEFKST 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,199
Number of Sequences: 336
Number of extensions: 1999
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)