Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   5.1  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    25   5.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   5.1  
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    24   8.9  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    24   8.9  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 337 CYVQSVIL*RRPK*AWLNT*KCIKILTQNSP 245
           C+++ V + RR + +WLN  + +K+   + P
Sbjct: 21  CFIKGVSVMRRRRDSWLNATQILKVADFDKP 51


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 368 LSKKPSDHYVVLC 330
           L K P DHY++LC
Sbjct: 92  LPKVPRDHYIILC 104


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 219 YNKIVRAPIGEFCVKIFMHFYVFSH 293
           + +I  AP   F  K  +H+Y+F H
Sbjct: 225 FKEINNAPFPNFISKEILHYYLFIH 249


>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = -1

Query: 395 IRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFA 246
           + R    NNL K     Y++    CY     E++    +E     +  FA
Sbjct: 181 VARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFA 230


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 7   KYNSISKDLKPNIFSLTFSQLSHF*EPNPISNPISSAI 120
           +Y ++SKD +  +F+  F +  HF     I+  ISS+I
Sbjct: 307 EYFNLSKDQQATVFAAIFEKTLHF-SRKYITGLISSSI 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,966
Number of Sequences: 5004
Number of extensions: 30754
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)