Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5c02
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727... 30 0.93
09_04_0394 - 17261008-17262476,17262554-17262743 29 2.2
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490... 29 2.2
04_03_0262 + 13597021-13597150,13597239-13597972,13598051-135985... 28 2.9
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686... 28 3.8
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 27 6.6
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242... 27 6.6
12_01_0705 + 6065932-6066061,6066150-6066883,6066962-6067423,606... 27 8.7
11_01_0582 - 4632377-4632677,4632757-4632927,4633010-4633842,463... 27 8.7
10_03_0045 - 7353148-7353448,7353528-7353698,7353781-7354613,735... 27 8.7
08_02_1391 + 26668539-26668668,26668757-26669490,26669569-266700... 27 8.7
07_03_1513 - 27327702-27328604,27329957-27329995,27330413-273306... 27 8.7
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973... 27 8.7
07_03_0729 - 21025525-21025825,21025905-21026075,21026158-210269... 27 8.7
06_01_1107 + 9120664-9120793,9120882-9121615,9121694-9123069,912... 27 8.7
04_03_0013 + 9393423-9393747,9396577-9396657,9397491-9397594,939... 27 8.7
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 27 8.7
>04_03_0454 -
16071490-16071534,16071849-16071980,16072523-16072771,
16075090-16075225,16077833-16078051,16079320-16079698,
16080238-16080478
Length = 466
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 404 RSIIRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 240
R+++ F+ T + SD Y V C K F S + E+ +H+N+ F +R
Sbjct: 298 RALLNYFRETE-AQVEASDKYRVTCMKKEFQNLSTYYLQEFEWLHQNYKPAFKER 351
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 86 LTRYLTRYLAQLNETIKIQTTNFINTQ 166
+TRY T Y+A+ E I IQ T F ++
Sbjct: 339 ITRYHTSYMAKFEENIGIQITTFAGSK 365
>02_05_0488 +
29448430-29448526,29448649-29448756,29448855-29449000,
29449109-29449319,29449752-29449989,29450098-29450248,
29450353-29450682
Length = 426
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 177 PILPCVLIKFVVCIFMVSFNCARYRVRYRVRFLEMAQLRER*TEDI 40
PI+ +L+ ++C C R+R R VR ++ LR D+
Sbjct: 41 PIMVSILVVVIICTLFYCVYCWRWRKRNAVRRAQIESLRPLSNSDL 86
>04_03_0262 +
13597021-13597150,13597239-13597972,13598051-13598512,
13598594-13599136,13599385-13599426,13599594-13599679,
13599759-13600017,13600456-13600494,13603624-13603737
Length = 802
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT+F EY Q + + CS+ + F ++ + R RN
Sbjct: 175 NHTSFDEYPQITEAVWEEFCSLKTTQEFRELSEAHRVLQQRN 216
>04_03_0461 -
16165126-16165419,16165947-16166195,16168510-16168645,
16171251-16171469,16172738-16173116,16173660-16173918,
16176052-16176315
Length = 599
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 404 RSIIRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 240
R++ F+ T + SD Y V C K F S + E+ +H+N+ F +R
Sbjct: 392 RALQNYFRETE-AQVEASDKYRVTCMKKEFQNLSTYYLQEFEWLHQNYKPAFKER 445
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT+F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTSFDEYPQITEAVWEEFCSLKTTQEFRESSEAHRVLQQRN 216
>02_05_0049 -
25423260-25423344,25423415-25423483,25424143-25424231,
25424315-25424407,25424516-25424594,25425557-25425657,
25425864-25425944,25426369-25426740
Length = 322
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 183 FCPILPCVLI-KFVVCIFMVSFNCA 112
F +LP +++ KF+VC+F + +CA
Sbjct: 49 FPKVLPLLILPKFLVCLFFLDISCA 73
>12_01_0705 +
6065932-6066061,6066150-6066883,6066962-6067423,
6067505-6068337,6068420-6068590,6068670-6068919,
6069367-6069405,6069598-6069672
Length = 897
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>11_01_0582 -
4632377-4632677,4632757-4632927,4633010-4633842,
4633924-4634385,4634464-4635197,4635286-4635415
Length = 876
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>10_03_0045 -
7353148-7353448,7353528-7353698,7353781-7354613,
7354695-7355156,7355235-7355968,7356057-7356186
Length = 876
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>08_02_1391 +
26668539-26668668,26668757-26669490,26669569-26670030,
26670112-26670944,26671364-26671577
Length = 790
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>07_03_1513 -
27327702-27328604,27329957-27329995,27330413-27330692,
27330772-27330942,27331025-27331857,27331939-27332400,
27332479-27333212,27333301-27333430
Length = 1183
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>07_03_1240 +
25095472-25095942,25096021-25096314,25096563-25097383,
25097466-25097636,25097716-25098016
Length = 685
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 429 LVKKY*HVAINHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSER 292
L K+ + NHT F EY Q + + CS+ + F + + R
Sbjct: 34 LFTKFVNPPSNHTPFDEYPQITEAVWEEFCSLKNTQEFRESSEAHR 79
>07_03_0729 -
21025525-21025825,21025905-21026075,21026158-21026990,
21027072-21027533,21027612-21028345,21028434-21028563
Length = 876
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>06_01_1107 +
9120664-9120793,9120882-9121615,9121694-9123069,
9123152-9123322,9123402-9123702
Length = 903
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 175 NHTPFDEYPQITEAVWEEFCSLKTTQQFRESSEAHRVLQQRN 216
>04_03_0013 +
9393423-9393747,9396577-9396657,9397491-9397594,
9397777-9397832,9398713-9398807,9400900-9401067,
9401181-9401341
Length = 329
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -1
Query: 383 KSTNNLSKK----PSDHYV-VLCPKCYFVTSSEVSVAEYIEMHKNFN 258
K+TN +K +H V VL P Y TS + +YI H NF+
Sbjct: 178 KATNEEEEKWRRWVDEHLVHVLSPNIYRTTSEALESFDYISKHGNFS 224
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 399 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRSERG*IHRN 274
NHT F EY Q + + CS+ + F + + R RN
Sbjct: 143 NHTPFDEYPQITEAVWEEFCSLKNTQEFRESSEAHRQLQQRN 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,103
Number of Sequences: 37544
Number of extensions: 156283
Number of successful extensions: 402
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -