Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        33   0.078
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.078
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   2.9  
SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)                   27   5.1  
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)              27   6.8  
SB_40844| Best HMM Match : DUF595 (HMM E-Value=6.1)                    27   8.9  
SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)                    27   8.9  

>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 341 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDF 225
           V  CP C  V  +E+ + E+I+MHK  N  + + C   F
Sbjct: 247 VYKCPLCVTVCENELILQEHIKMHKRKNKHYCNYCAEVF 285



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 338  VLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCP 234
            + CP+C     SE  +  ++  HK++ +K   R P
Sbjct: 1371 IACPRCEKSFRSEAQLKRHLSEHKDYGSKSRPRSP 1405


>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 341 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDF 225
           V  CP C  V  +E+ + E+I+MHK  N  + + C   F
Sbjct: 179 VYKCPLCVTVCENELILQEHIKMHKRKNKHYCNYCAEVF 217


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = +2

Query: 2   KENTT---LFLRTLNPIS---SV*RSLN*AISKNLTRYLTRYLA-QLNETIKIQTTNFIN 160
           +E TT   L LRTLNP +   SV   ++  I+ N  R+ T Y   ++ E++ + TTN IN
Sbjct: 89  RETTTQISLQLRTLNPSNQPISVQVQVD-DINDNEPRFPTLYYTLRIRESMDVNTTNPIN 147

Query: 161 --TQGKIGQNNFHDYS 202
             T    G N   DY+
Sbjct: 148 TATDPDAGNNGTVDYT 163


>SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)
          Length = 276

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 135 KYKQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVFSHAHFGRRH 314
           K+  Q     R + G    ++ P  R+N+   V   I   CVK+       S  H  R+H
Sbjct: 217 KFTHQAYRYRRPRGGARYQLLFPLVRVNFELGVIMVIAVSCVKLLSAHN--STQHTSRKH 274

Query: 315 KI 320
           K+
Sbjct: 275 KV 276


>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
          Length = 398

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 177 PILPCVLIKFVVCIFMVSF 121
           PILPC    FV+C+F+V+F
Sbjct: 186 PILPC---SFVLCLFLVTF 201


>SB_40844| Best HMM Match : DUF595 (HMM E-Value=6.1)
          Length = 194

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 141 KQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVFSHAHFGRRHKI 320
           K Q     R + G    ++ P  R+N+   V   I   CVK+       S  H  R+HK+
Sbjct: 137 KHQAYRYRRPRGGARYQLLFPLVRVNFELGVIMVIAVSCVKLLSAHN--STQHTSRKHKV 194


>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
          Length = 525

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 411 HVAINHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVRS 298
           HV +  T +    + Q+   +S+CS +S+ LF  V R+
Sbjct: 51  HVTVRQTVYFASVRKQRVREQSICSRISQTLFAKVSRT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,593
Number of Sequences: 59808
Number of extensions: 214370
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)