Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    24   2.7  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    22   8.3  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 220 EKFYTCCDEPYLDITFNITMRRKTL 244


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 220 EKFYTCCDEPYLDITFNITMRRKTL 244


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 216 EKFYTCCDEPYLDITFNITMRRKTL 240


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 122 NETIKIQTTNFINTQGKIGQNNFHDYSNF 208
           N  ++  TT+  NTQ + GQ    DY ++
Sbjct: 39  NRCLQFGTTSTTNTQQQNGQEFVDDYDSY 67


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 284  IQPRSLRTTSQNNTLDITLHNDRKAFC 364
            +QP  L ++ QNN L   L N   + C
Sbjct: 1128 LQPERLNSSGQNNPLKGKLTNCHSSGC 1154


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,425
Number of Sequences: 2352
Number of extensions: 7429
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)