Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.      31   0.37 
Z74030-9|CAA98435.1|  188|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    28   2.6  
L13200-6|AAZ32790.1|  189|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    27   4.5  

>Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical
           protein F43G9.11 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -1

Query: 416 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 240
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 239 CPN-DFIVINSKSWNNH 192
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -1

Query: 416 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 240
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 239 CPN-DFIVINSKSWNNH 192
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>Z74030-9|CAA98435.1|  188|Caenorhabditis elegans Hypothetical
           protein D1054.10 protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 64  QLSHF*EPNPISNPISSAIK*NHKNTNNKLY 156
           +L  F  PNP++NP+ SA K  + N N K Y
Sbjct: 60  RLGVFNSPNPLTNPLLSAPKIAYFNRNGKEY 90


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 186 IFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 278
           IF ++  F+INY K +++P+  F   +F  F
Sbjct: 501 IFELLIFFKINYQKSIKSPVSVFSNYLFFGF 531


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 186 IFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 278
           IF ++  F+INY K +++P+  F   +F  F
Sbjct: 390 IFELLIFFKINYQKSIKSPVSVFSNYLFFGF 420


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 332 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 186
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 332 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 186
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>L13200-6|AAZ32790.1|  189|Caenorhabditis elegans Hypothetical
           protein ZK1236.9 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4   GKYNSISKDLKPNIFSLTFSQ--LSHF*EPNPISNPISS 114
           G +N       PN+FSL+ S+  +S F  PN +  P SS
Sbjct: 17  GSFNKEGTPTTPNLFSLSNSEERISQFTLPNYVEQPTSS 55


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 395 IRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTK 252
           +RR K T  LSK P+DHY           +  +S+ + IE  K+   K
Sbjct: 353 LRRKKDTYKLSKLPADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVK 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,295
Number of Sequences: 27780
Number of extensions: 171567
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)