Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c02
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.64 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.64 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.64 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   5.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 424 EKILTCCDQSY-DVSRVQTISAKSL 353
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTL 241


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 215 NSKSWNNHENCSALFYPV 162
           N K++NN+ N   L+Y +
Sbjct: 310 NYKNYNNNYNSKKLYYNI 327


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 215 NSKSWNNHENCSALFYPV 162
           N K++NN+ N   L+Y +
Sbjct: 321 NYKNYNNNYNSKKLYYNI 338


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 275 FLCIQPRSLRTTSQNNTLDITLHNDRKAFC 364
           ++ +  +SLRT S    +++ + N    FC
Sbjct: 75  YIFLSTKSLRTPSNLFVINLAISNFLMMFC 104


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 215 NSKSWNNHENCSALFYPV 162
           N+  +N + NC  L+Y +
Sbjct: 94  NNYKYNYNNNCKKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,008
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)