Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c01
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical ...    55   1e-08
L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    46   1e-05
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AL023835-14|CAA19489.2|  192|Caenorhabditis elegans Hypothetical...    27   4.2  
U39999-5|AAA81106.1|  263|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical
           protein F32D1.2 protein.
          Length = 54

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +3

Query: 96  MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 248
           M AWR AGL Y+ YS IAA++ R+  KQ     A+K+ E+ +++T W NG+
Sbjct: 1   MVAWRAAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWENGK 51


>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +3

Query: 96  MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 248
           M AWR AGL Y+ YS IAA+V+R+  K       +K+ ++ ++ T W NG+
Sbjct: 1   MVAWRAAGLNYVRYSQIAAQVVRQCTK---GGANVKKPQATLKTTAWENGK 48


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +3

Query: 96  MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 248
           M AWR AGL Y+ YS IAA+V+R+  K       +K+ ++ ++ T W NG+
Sbjct: 1   MVAWRAAGLNYVRYSQIAAQVVRQCTK---GGANVKKPQATLKTTAWENGK 48


>AL023835-14|CAA19489.2|  192|Caenorhabditis elegans Hypothetical
           protein Y37A1B.4 protein.
          Length = 192

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 211 NLTSESHLGPTDDLHTSRKLFQSEEGIV 294
           N+  + H G +D +H  RKL    EG++
Sbjct: 162 NILPQKHQGASDVVHGRRKLMDDLEGVI 189


>U39999-5|AAA81106.1|  263|Caenorhabditis elegans Hypothetical
           protein F41G3.5 protein.
          Length = 263

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 12  YFTLLSGCGIQENFNLFLRIKVNKNINKMSA 104
           YF  +  CG  E FN  +   V KN++++ A
Sbjct: 16  YFCRVFFCGKAEKFNFLIMTLVGKNLSELRA 46


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 309 SCMLVNYSFF-TLEQLSGGVQVVRWPKV*L*REIRHVSTPLLEILALVTCEAPWLRCLSS 133
           S +++ Y FF T  +    V  V W    + R +R ++ P++  +   T  AP+++   S
Sbjct: 316 SGLVLTYMFFKTTPKKKMIVNPVTWIMFYVHRYLR-LTPPIMLFIGFFTVYAPYIQGPFS 374

Query: 132 LCKLNQLASKRSFC 91
             ++NQL  +   C
Sbjct: 375 ASQMNQLVMEADEC 388


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 78  NKNINKMSAWRQAGLTYINYSNI 146
           N N N+M+AW +A  T +NY NI
Sbjct: 78  NHNYNEMTAWLKA--TRLNYPNI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,300,724
Number of Sequences: 27780
Number of extensions: 156319
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)