Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5b24
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 109 3e-24
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 6e-16
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09) 30 2.1
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 30 2.1
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 29 4.8
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6) 29 4.8
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10) 28 8.4
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 109 bits (261), Expect = 3e-24
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Frame = +3
Query: 180 MAPIKVGDQLPAA--DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 353
M P + G ++P + E + KV+ L AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1 MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60
Query: 354 NADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPL 533
A K+ GV +I+C+SVND +VM +W A + + + D +G F + + + + L
Sbjct: 61 LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSDL 119
Query: 534 G-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLAD 638
G G RS R+SM++ D ++ + +EPD G ++D
Sbjct: 120 GFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155
>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 81.4 bits (192), Expect = 6e-16
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +3
Query: 366 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 542
+KS GV + C++VNDP+VM+AWG + +GK A+DL + P LG
Sbjct: 53 IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK-------------AVDLELDATPFLGNI 99
Query: 543 RSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 644
RSKR++M++ D V+ L+VEPDGTGL+CSL++ I
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133
>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
Length = 231
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 90 MFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELT 269
M G ++ G + ASA + LS I G QLP DL D+ N + ++
Sbjct: 18 MRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAIQIA 77
Query: 270 A 272
+
Sbjct: 78 S 78
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 306 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 410
A PG S+ L + + A +KSD +A+ IVCV +N
Sbjct: 84 ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119
>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 495 IKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 593
++A+DL TN+ +G R+ F + VD +V+D+
Sbjct: 80 VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 441 QHNTKGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQ 587
QHNT+ K+ ++A+ + + + G + L KR+S +VDSK +
Sbjct: 908 QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956
>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
Length = 178
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 372 ISVYLRSVRIPASVF*NIPG*RRPAPQII 286
+SVY S +P +VF +PG R P P ++
Sbjct: 24 LSVYKASELLPRTVFIRVPGGRCPCPHLL 52
>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 607 SGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKL 488
SG + + T+++ T+EN++ PP G V R R + +L
Sbjct: 3 SGCGYETTTMITNWTVENVIPLPPPEGH--VEREREIYEL 40
>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
Length = 597
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 415 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 290
GSL + TI+++ +F+++A +PG + V P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -3
Query: 455 FSVVL-SSPSRHHIRVINRHAHYFSNSIRFQFICVLYVS 342
FS++L SSPS++H ++ H+ ++ F +I ++ +S
Sbjct: 261 FSIILTSSPSKYHRHLVPSPFHHDNSLHHFPYISIINIS 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,486,514
Number of Sequences: 59808
Number of extensions: 505669
Number of successful extensions: 1190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -