Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b23
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1; ...    36   0.98 
UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    35   1.7  
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    35   2.3  
UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Re...    34   3.0  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    34   4.0  
UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_Q2HFS0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Re...    33   9.2  
UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   9.2  

>UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG00211.1 - Gibberella zeae PH-1
          Length = 285

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +1

Query: 124 GQFCVIYFFLLTTSLLV--DNIRIGIKPRAFEK*RDVDVENTGAIILIDAVMTARILDLG 297
           G+ C +     TT L V  D I   I+        +  + N G II+I  ++   IL L 
Sbjct: 110 GEDCSLISVRKTTRLFVIGDFITFNIQGNGGGLLANEKLANAGKIIVIVGLIAQIILFLA 169

Query: 298 --VCCN-YHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT 405
             VCC  +HRR R   R+S TP   ++ W + +  L+ T
Sbjct: 170 FVVCCVVFHRRFRVHLRQSHTPV--EIRWEAYLNMLYMT 206


>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -2

Query: 636  FVTPSIC*PALLHTPADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQECDSVLRL 457
            F TP+   P     P  L  A P YSG H SPP     + G  +       Q  DS+ +L
Sbjct: 850  FFTPTRSTP---EEPMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKL 905

Query: 456  DGTGKVVINLT 424
            DG+    + L+
Sbjct: 906  DGSSSPPLELS 916


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 506 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 342
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Rep:
           ABL097Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 119

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 304 CNYHRRDRAVCRKSKTPTPQDVSWHSSVE 390
           C++ +RD AVC K K P  QD+  H S +
Sbjct: 37  CDFRQRDLAVCIKQKVPVVQDIMKHCSAQ 65


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 506 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 342
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 355

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 449 VPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTASCKSAGVCSSAGQQMDG 628
           +P  R+  +   T  HA + LPP   +SV+   +CA         + +G CS  G +MDG
Sbjct: 249 LPPGRHRATLKATLEHANITLPP---VSVDFELSCAARVANAGMSQMSG-CSDGGTEMDG 304


>UniRef50_Q2HFS0 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 1896

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 308 LQQTPKSRIRAVMTASMRMIAPVFSTSTSRHFSKARGFIPILILSTRSEVVNK 150
           +  TP+  +RA++ A  R++A V    T+ HF+ ARG   IL +     V N+
Sbjct: 591 MSSTPEV-VRALVDAGARLVARVADGRTALHFAAARGHAEILKILLDKSVANE 642


>UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 629

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 594 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 478
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 246

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 416 REIVRLMTTLPVPSNRNTLSHSCTERHAQLFLP 514
           R  V L   LPVP + NT +H C  RH   + P
Sbjct: 81  RRRVHLPLALPVPQSSNTTAHPCCARHTPNWFP 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,846,545
Number of Sequences: 1657284
Number of extensions: 13966170
Number of successful extensions: 35057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35044
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)