Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b23
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   9.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 456 LIAIRCRTLVPNATRSYFCHQQQR 527
           +IA    TL+   T +Y+ H+Q+R
Sbjct: 385 IIAPLIATLIATVTVNYYRHKQKR 408


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 658 LQCSNNPVRYA 626
           +QCSN+P+R A
Sbjct: 60  IQCSNSPLRKA 70


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 114 ATSTASQNLSSPASSTSSTSSTEKA 138


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 AVMTASMRMIAPVFSTSTSRHFSKA 204
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,009
Number of Sequences: 336
Number of extensions: 3608
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)