Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b15
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   2.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   5.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   6.6  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   8.8  

>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 259 QTMNLNPLI-LANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSR 411
           +T++  P + LA IQ      V   +  TY EVV++++ +V+   PW + ++
Sbjct: 31  KTVSATPAVQLAQIQFPLPTLVIPAESTTYREVVEDVFAKVEQEHPWVKETK 82


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 LFKLKTYHEVVDEIYYQVKHLEPW 396
           +F    Y +V++E+YY + H + W
Sbjct: 484 IFFASEYLDVINEVYYSLDHGQSW 507


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 596 DIHNHQLIYLTGM--WITLKMK-KRLTPVLEVVHPQLLEHL 709
           ++H    I  TG   W   K + +RLTP  E+ H QLL H+
Sbjct: 648 EMHIFPQILETGKCRWSDCKYEIQRLTPASELSHYQLLSHI 688


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 535 NGLLQHTDSPYIRALGFMYIRY 600
           NGLL+H +SP+I+  G +   Y
Sbjct: 115 NGLLRHFESPHIQCAGVVVNDY 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,384
Number of Sequences: 5004
Number of extensions: 50319
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)