Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b15
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical ...   161   5e-40
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.2 protein.
          Length = 327

 Score =  161 bits (391), Expect = 5e-40
 Identities = 79/192 (41%), Positives = 108/192 (56%)
 Frame = +1

Query: 178 EIDEFNQYQKSSKTGKQHNVLPIWGNEQTMNLNPLILANIQGSSYFKVHLFKLKTYHEVV 357
           E +E+   + + K GK+ N LP+WGN+ TMNLN L+L NI+ S Y+K +L ++  +  ++
Sbjct: 36  EEEEYEDEEGTYK-GKRSNTLPVWGNKVTMNLNTLVLENIRESYYYKNNLVEIDNFQTLI 94

Query: 358 DEIYYQVKHLEPWERGSRKTSXXXXXXXXXXXXXXXXXXSTAFCXXXXXXXXXXXXXQVN 537
           ++I+YQVKHLEPWE+G+R+                    S+A+C             Q+ 
Sbjct: 95  EQIFYQVKHLEPWEKGTRRLQGMTGMCGGVRGVGAGGVVSSAYCLLYRLFNLKISRKQLI 154

Query: 538 GLLQHTDSPYIRALGFMYIRYTQPPADLXXXXXXXXXXXXXXXPRAGGGASTTIGALVRQ 717
            +L    S YIR LGFMYIRYTQPPADL               PR+GGG   T G LVR 
Sbjct: 155 SMLNSRQSVYIRGLGFMYIRYTQPPADLWYWLEPYLDDDREIDPRSGGGDLMTFGQLVRT 214

Query: 718 MLVKLDWFSTLF 753
           M+ KLDW+ TLF
Sbjct: 215 MINKLDWYGTLF 226


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 728 FTSICRTSAPIVVDAPPPARG 666
           F   C  SAPI+V+ PPP  G
Sbjct: 128 FGPACAPSAPIIVNGPPPCFG 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,705
Number of Sequences: 27780
Number of extensions: 288548
Number of successful extensions: 716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)