Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b11
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    35   1.7  
UniRef50_Q54K11 Cluster: G-protein-coupled receptor (GPCR) famil...    35   1.7  
UniRef50_A6PKX6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Re...    33   8.8  
UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   8.8  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -2

Query: 593  FVTPSIC*PALLHTPADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQECDSVLRL 414
            F TP+   P     P  L  A P YSG H SPP     + G  +       Q  DS+ +L
Sbjct: 850  FFTPTRSTP---EEPMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKL 905

Query: 413  DGTGKVVINLT 381
            DG+    + L+
Sbjct: 906  DGSSSPPLELS 916


>UniRef50_Q54K11 Cluster: G-protein-coupled receptor (GPCR) family
            protein; n=1; Dictyostelium discoideum AX4|Rep:
            G-protein-coupled receptor (GPCR) family protein -
            Dictyostelium discoideum AX4
          Length = 1604

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 20/81 (24%), Positives = 40/81 (49%)
 Frame = +3

Query: 96   IYFFLLTTSLLVDNIRIGIKPRAFEK*RDVDVENTGAIILIDAVMTAPILDLGVCCINHR 275
            ++FF++T+++ +   R+    R  E+  D+ +EN+  + L   ++  P + + V  I  R
Sbjct: 1221 LFFFIITSAIFIKQYRVYCLIRGVEELHDMSIENSYLLKLQSFILIIPAILIAVSVIATR 1280

Query: 276  RDRVVGKKIKTPTPQDVYWYS 338
              R     ++  T Q  Y YS
Sbjct: 1281 MHRKYNFDLQKETIQ-AYCYS 1300


>UniRef50_A6PKX6 Cluster: Putative uncharacterized protein; n=1;
           Victivallis vadensis ATCC BAA-548|Rep: Putative
           uncharacterized protein - Victivallis vadensis ATCC
           BAA-548
          Length = 1042

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 597 DYWSIAGAI*TLTMEAPSV*FVHRRRA 677
           D+WS AGA+ TL +EAPS+   +R+RA
Sbjct: 594 DFWSYAGALETLAVEAPSLADANRKRA 620


>UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 355

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 406 VPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTASCKSAGVCSSAGQQMDG 585
           +P  R+  +   T  HA + LPP   +SV+   +CA         + +G CS  G +MDG
Sbjct: 249 LPPGRHRATLKATLEHANITLPP---VSVDFELSCAARVANAGMSQMSG-CSDGGTEMDG 304


>UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 629

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 551 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 435
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 246

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 373 REIVRLMTTLPVPSNRNTLSHSCTERHAQLFLP 471
           R  V L   LPVP + NT +H C  RH   + P
Sbjct: 81  RRRVHLPLALPVPQSSNTTAHPCCARHTPNWFP 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,572,256
Number of Sequences: 1657284
Number of extensions: 13830630
Number of successful extensions: 34357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34347
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)