Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b06
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.5  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +2

Query: 353 IITMK*IEKLT--FLNYGTEKISHHICCIKSFFNE-VYLCRGSLLNLKSQ*CTSKISLSE 523
           IIT K I  +T     Y   ++S     + + +NE +++ +  L+N KSQ  T K++   
Sbjct: 484 IITGKSIYAVTPSCTKYNLLEVSGDEEFVLAAYNELIFIVKKDLMNFKSQLLTLKLNTLS 543

Query: 524 NGNVELKT 547
           NG +EL++
Sbjct: 544 NGTLELQS 551


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 589 QYTCHFSVVITFRHFFFFKSYPKNGISIKLNMSLSRPAPLM 711
           Q + H S +  F  FFFF S+P     IK  MS SR + L+
Sbjct: 251 QASIHLSQINYFLWFFFFFSFP--SYIIKYLMSHSRRSKLL 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,252
Number of Sequences: 5004
Number of extensions: 43000
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)