Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b06
         (713 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF203334-1|AAF19829.1|  110|Anopheles gambiae immune-responsive ...    26   1.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   1.8  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   7.2  

>AF203334-1|AAF19829.1|  110|Anopheles gambiae immune-responsive
           serine protease-relatedprotein ISPR5 protein.
          Length = 110

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 221 YYIDIRMKYY*NFIL 265
           YYID R+KYY N  L
Sbjct: 22  YYIDCRLKYYSNLTL 36


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 642  KKKKMSKSYDHGKMTSILRS 583
            +KKK  +S ++G MTSIL S
Sbjct: 2980 RKKKHRRSIEYGNMTSILPS 2999


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 419 HICCIKSFFNEVYLCRGSLLNL 484
           H+CC ++FF+E+    G  + L
Sbjct: 290 HMCCDRAFFDELKQSTGVSITL 311


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,908
Number of Sequences: 2352
Number of extensions: 9079
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)