Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5b06
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   6.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   6.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   6.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   6.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 36  IITNSVTNWFL*-SSTNDNNIFMYYYDNVIIKI 131
           I+  S  +W L  +STN  NI +YY D++ + +
Sbjct: 295 ILCMSDLHWQLPHNSTNPPNILLYYRDSLALSV 327


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  SSTNDNNIFMYYYDNVIIKITLFYYIN 152
           ++T  NN + Y Y+N      L+Y IN
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  SSTNDNNIFMYYYDNVIIKITLFYYIN 152
           ++T  NN + Y Y+N      L+Y IN
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  SSTNDNNIFMYYYDNVIIKITLFYYIN 152
           ++T  NN + Y Y+N      L+Y IN
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  SSTNDNNIFMYYYDNVIIKITLFYYIN 152
           ++T  NN + Y Y+N      L+Y IN
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 21 MSKYFIITNSVTNW 62
          +SKY +IT++  NW
Sbjct: 29 LSKYQLITSTTLNW 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,452
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)