Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a24
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   3.8  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    26   5.1  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    26   6.7  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    26   6.7  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 104 NVLSLGDVVVSAPDNRVQNRGFDSHI--GKNSHDTCIKVLLPLCGTDN 241
           N  S+ +VV   P NRV+N    +HI  GK++   CI  L  +    N
Sbjct: 42  NKPSIQEVVRGIPQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINEHN 89


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 427 YLSSNYVIYVHIFINKIVFICFGILIF 507
           Y+S+   ++  +FI  I+FI FG++ F
Sbjct: 256 YISTKIKVHKVMFIGGILFIAFGLVYF 282


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 427 YLSSNYVIYVHIFINKIVFICFGIL 501
           Y+S+   +Y  +F   IVF+ FGIL
Sbjct: 232 YISNKIEMYKVLFFGGIVFMIFGIL 256


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 418 PENVKYFKVSLPFYCRYFKSMY 353
           PEN KYF +    + ++FK ++
Sbjct: 226 PENRKYFDLGYQIFLKFFKELF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,479
Number of Sequences: 5004
Number of extensions: 59970
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)