Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a24
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-3|AAB94222.1|  748|Caenorhabditis elegans Carnitine pal...    31   1.2  
U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF039047-3|AAB94222.1|  748|Caenorhabditis elegans Carnitine
           palmitoyl transferaseprotein 4 protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 363 LKYLQ*NGRLTLKYLTFS--GCYISIF*LRHICTYFYK*NRIYLF 491
           L++++ + +  LK L  S    Y SIF LRHI  YFY   + YLF
Sbjct: 62  LEHIKEDAQKLLKPLAISIGSVYTSIFILRHILKYFYFSYKGYLF 106


>U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical
           protein E04F6.15 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 56  RELTDIYI*D*YLYHTNVLSLGDVVVSAPDNRVQNRGFDSHIGKN--SHDTCIKVLLPL 226
           ++  D Y+   +  H  +L+ G   V  P  +  + GF++H G N  +H   IK LLP+
Sbjct: 95  KKAADEYLEQKWPLHGLILNAG---VFGPSEKTTSDGFEAHFGINHLAHFILIKELLPV 150


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 615  CTYQYHDILREITLN*PCFC*SLCHSESH*NWFSECEDQYTET 487
            CT Q++ I  E + +  C   S C   S+   F EC D +T T
Sbjct: 1838 CTDQFYGIYCEKSCSEQCVHSSGCKQSSNGTVFCECYDGFTST 1880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,849,323
Number of Sequences: 27780
Number of extensions: 325337
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)