Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;...    42   0.003
UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56; Fu...    42   0.003
UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158; Eukar...    42   0.003
UniRef50_A7TCB3 Cluster: Predicted protein; n=1; Nematostella ve...    40   0.011
UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S riboso...    39   0.019
UniRef50_UPI00015533B4 Cluster: PREDICTED: similar to ribosomal ...    39   0.026
UniRef50_Q4V5X9 Cluster: IP07888p; n=8; Eukaryota|Rep: IP07888p ...    38   0.034
UniRef50_Q0CUU2 Cluster: 60S ribosomal protein L12; n=1; Aspergi...    31   5.1  

>UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 230 GCNVDGRHPHDIIDDINSGAV 250


>UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56;
           Fungi/Metazoa group|Rep: Ribosomal protein L12 variant -
           Homo sapiens (Human)
          Length = 197

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 172 GCNVDGRHPHDIIDDINSGAV 192


>UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158;
           Eukaryota|Rep: 60S ribosomal protein L12 - Homo sapiens
           (Human)
          Length = 165

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>UniRef50_A7TCB3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 136

 Score = 39.9 bits (89), Expect = 0.011
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTIDE 75
           GCTV+G  PHD+ID INSG + I++
Sbjct: 110 GCTVDGMAPHDVIDKINSGEIEIED 134


>UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S ribosomal
           protein L12; n=1; Macaca mulatta|Rep: PREDICTED: similar
           to 60S ribosomal protein L12 - Macaca mulatta
          Length = 268

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PH +IDDINSGA+
Sbjct: 243 GCNVDGRHPHKIIDDINSGAV 263


>UniRef50_UPI00015533B4 Cluster: PREDICTED: similar to ribosomal
           protein L12; n=1; Mus musculus|Rep: PREDICTED: similar
           to ribosomal protein L12 - Mus musculus
          Length = 142

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+G  PHD+IDDINSGA+
Sbjct: 117 GCNVDGCHPHDIIDDINSGAV 137


>UniRef50_Q4V5X9 Cluster: IP07888p; n=8; Eukaryota|Rep: IP07888p -
           Drosophila melanogaster (Fruit fly)
          Length = 307

 Score = 38.3 bits (85), Expect = 0.034
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTI 69
           GCTV+G+ PHD+ID++N G++ +
Sbjct: 282 GCTVDGKHPHDVIDELNEGSIEV 304


>UniRef50_Q0CUU2 Cluster: 60S ribosomal protein L12; n=1;
           Aspergillus terreus NIH2624|Rep: 60S ribosomal protein
           L12 - Aspergillus terreus (strain NIH 2624)
          Length = 189

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTI 69
           GC V+GR P D+ DD+ +G + I
Sbjct: 164 GCQVDGRSPKDVSDDVKAGEIDI 186


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,564,680
Number of Sequences: 1657284
Number of extensions: 880759
Number of successful extensions: 2086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2086
length of database: 575,637,011
effective HSP length: 15
effective length of database: 550,777,751
effective search space used: 10464777269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)