Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    32   0.012
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    32   0.012
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   0.76 
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    22   9.3  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 31.9 bits (69), Expect = 0.012
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTIDE 75
           GCTV+G+ PHD+  +I++G + I +
Sbjct: 140 GCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 31.9 bits (69), Expect = 0.012
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTIDE 75
           GCTV+G+ PHD+  +I++G + I +
Sbjct: 140 GCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 84  KHLFINGQSSAVDVINKIMWRPALHSTS 1
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 43  DINSGALTIDE 75
           D+NSG++TID+
Sbjct: 635 DVNSGSITIDD 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,992
Number of Sequences: 5004
Number of extensions: 3732
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)