Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    21   7.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           20   9.2  
AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.     20   9.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTIDE*MFLI 90
           GC V    P  L+D I+ G +T +   F++
Sbjct: 299 GCHVLVATPGRLLDFIDRGYVTFENVNFVV 328


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 35   RSCGGLPSTVH 3
            RSC G+P   H
Sbjct: 1009 RSCAGVPENAH 1019


>AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 10  VEGRPPHDLIDDINSGALTIDE 75
           +EG+PP  L+  I +   ++ E
Sbjct: 163 LEGQPPGQLLSSIIAAVYSVPE 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,768
Number of Sequences: 2352
Number of extensions: 873
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 15
effective length of database: 528,699
effective search space used: 10045281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)