Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12 pro...    42   4e-04
BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12 p...    42   4e-04
BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12 p...    42   4e-04
BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.        42   4e-04
BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12 p...    42   4e-04
AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12 ...    42   4e-04
AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12 v...    42   4e-04
AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Riboso...    40   0.001

>L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.
          Length = 132

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 107 GCNVDGRHPHDIIDDINSGAV 127


>BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 140 GCNVDGRHPHDIIDDINSGAV 160


>AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12
           variant protein.
          Length = 197

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+GR PHD+IDDINSGA+
Sbjct: 172 GCNVDGRHPHDIIDDINSGAV 192


>AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Ribosomal
           Protein L12 LIKE protein) protein.
          Length = 165

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGAL 63
           GC V+G  PHD+IDDINSGA+
Sbjct: 140 GCNVDGHHPHDIIDDINSGAV 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,036
Number of Sequences: 237096
Number of extensions: 142123
Number of successful extensions: 4196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4196
length of database: 76,859,062
effective HSP length: 15
effective length of database: 73,302,622
effective search space used: 1392749818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)