Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    33   0.027
Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    33   0.027
U80953-5|AAO61446.3|  317|Caenorhabditis elegans Dachsund transc...    25   7.1  
U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund transc...    25   7.1  

>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
          protein JC8.3c protein.
          Length = 50

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 1  GCTVEGRPPHDLIDDINSGALTI 69
          GCT++G+ PHD+I+ I +G + I
Sbjct: 25 GCTIDGQHPHDIIESIANGEIEI 47


>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTI 69
           GCT++G+ PHD+I+ I +G + I
Sbjct: 140 GCTIDGQHPHDIIESIANGEIEI 162


>U80953-5|AAO61446.3|  317|Caenorhabditis elegans Dachsund
           transcription factor homologprotein 1, isoform b
           protein.
          Length = 317

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   CTVEGRPPHDLIDDINSGALTI 69
           CT  GRP     DD N+GA+ I
Sbjct: 76  CTRPGRPSKRSFDDWNNGAVII 97


>U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund
           transcription factor homologprotein 1, isoform a
           protein.
          Length = 420

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   CTVEGRPPHDLIDDINSGALTI 69
           CT  GRP     DD N+GA+ I
Sbjct: 179 CTRPGRPSKRSFDDWNNGAVII 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,902
Number of Sequences: 27780
Number of extensions: 22034
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)