Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a21
         (105 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              24   0.20 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   5.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   7.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   7.4  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 0.20
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   CTVEGRPPHDLIDDINSGALTIDE*MFLISIK 99
           C  E      +IDDIN G + +D+   L+ I+
Sbjct: 33  CMKEIGTAQQIIDDINEGKINMDDENVLLFIE 64


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 1   GCTVEGRPPHDLIDDINSGALTIDE*MFLI 90
           GC +    P  L+D +  G +      FL+
Sbjct: 323 GCHILVATPGRLLDFVEKGRVKFSSVQFLV 352


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 90  Y*KHLFINGQSSAVDVINKIMWR 22
           Y   + I G +SAV    K+ WR
Sbjct: 550 YPASMTIPGSNSAVFTNYKLYWR 572


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 4   CTVEGRPPHDLIDDI 48
           C VE    ++L++DI
Sbjct: 110 CNVEAEENYNLLEDI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,414
Number of Sequences: 438
Number of extensions: 247
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)