Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5a17
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 212 2e-55
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 37 0.013
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.12
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 32 0.36
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 31 0.63
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 31 0.63
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 31 0.63
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 30 1.9
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 30 1.9
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 29 4.5
AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 28 7.8
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 212 bits (517), Expect = 2e-55
Identities = 105/186 (56%), Positives = 135/186 (72%), Gaps = 6/186 (3%)
Frame = +2
Query: 95 MVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 256
MVLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+ RQHTFVET+SV
Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60
Query: 257 RYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFD 436
RYVY PLD +Y++L+TTK SNILEDLETLRLF RV+PEYC E E+L F+L+FAFD
Sbjct: 61 RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120
Query: 437 EIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAA 616
E+V LGYRESVNLAQ+R+F EMDSHEE+++ +++ Q L+R + EA
Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEAL 180
Query: 617 KRGQPP 634
RG P
Sbjct: 181 SRGLKP 186
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = +2
Query: 131 GKALVSRQFV-EMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITT 307
G ++SR + ++ + IE + + G + + + Y Y +Y++ I+
Sbjct: 13 GNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKYMNVYLVTISK 72
Query: 308 KASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVR 487
K +N++ L L V EY L E V + + FDE++ GY ++ ++
Sbjct: 73 KNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQTTESKILQ 132
Query: 488 SFV 496
F+
Sbjct: 133 EFI 135
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = +2
Query: 125 KSGKALVSRQFVEMTKARIEGLLAAFPKLMT-GGRQHT-FVETESVRYVYQPLDKLYMLL 298
++GK +++ ++ + L+ +T +HT FVE + + VY+ LY +
Sbjct: 10 RAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCI 69
Query: 299 ITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG-YRESVNL 475
N L LE + F V+ EY + E +++ + + DE+ G RE+
Sbjct: 70 CVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQT 129
Query: 476 AQVRSFVEMDSHE 514
++ + + S E
Sbjct: 130 KVLKQLLMLTSLE 142
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/116 (21%), Positives = 49/116 (42%)
Frame = +2
Query: 137 ALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKAS 316
A +Q ++ + I +LA PK+ F+E + ++ VY+ LY +
Sbjct: 22 AYPDKQKKKICRELITQILARKPKMCA------FLEYKDLKVVYKRYASLYFCCAIEQND 75
Query: 317 NILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQV 484
N L LE + + ++ +Y + E +++ F DE + G + + QV
Sbjct: 76 NELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQETSKKQV 131
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 31.5 bits (68), Expect = 0.63
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = -1
Query: 354 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 187
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1245 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
Query: 186 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSYI*FS*KTPKYFRIG 34
M AF +S W+ R DF+ T+ I+ I+F + + + P YF G
Sbjct: 1305 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF-----QLPAYFAGG 1350
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 31.5 bits (68), Expect = 0.63
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = -1
Query: 354 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 187
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1223 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1282
Query: 186 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSYI*FS*KTPKYFRIG 34
M AF +S W+ R DF+ T+ I+ I+F + + + P YF G
Sbjct: 1283 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF-----QLPAYFAGG 1328
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 31.5 bits (68), Expect = 0.63
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = -1
Query: 354 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 187
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1245 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
Query: 186 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSYI*FS*KTPKYFRIG 34
M AF +S W+ R DF+ T+ I+ I+F + + + P YF G
Sbjct: 1305 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF-----QLPAYFAGG 1350
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +2
Query: 284 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 463
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 464 SVNLAQVRSFV 496
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +2
Query: 284 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 463
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 464 SVNLAQVRSFV 496
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 254 VRYVYQPLDKLYMLLITTKASNILEDLETLRLFS--RVVPEYCVQLTETEVLN 406
V VY P D L I + A ++LED +T+RL S ++ PE +L + EVL+
Sbjct: 252 VSIVYPPCDVEAFLNIESVAESLLEDTKTVRLLSVGQIRPEKNHKL-QLEVLH 303
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 182 EGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKL-YMLLITTKASNILEDLET-LRLFS 355
E L +FP ++ R H E+ +VR V + + L + LL+ T A+ ++D + +LF+
Sbjct: 201 EPLDESFPAVIVASRAHLEAESMAVRSVPRTILMLGFHLLVYTFAARTIKDTQCGFKLFT 260
Query: 356 RVV 364
R +
Sbjct: 261 RSI 263
>AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical
protein F48G7.12 protein.
Length = 435
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 287 YMLLITTKASNILEDLETLRLFSR 358
Y ++T KA +++EDLE L+SR
Sbjct: 399 YQEILTEKAEHLMEDLERWHLYSR 422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,893
Number of Sequences: 27780
Number of extensions: 338915
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -