Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5a16
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 28 0.70
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 27 1.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 2.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 2.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 3.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 4.9
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 25 6.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 6.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 8.6
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 0.70
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 301
N+++ +L+ + + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 309 LTISSTLMPVMQDERKMSKRKKKVINNNKYILFN 410
L SS++M + Q E+KMSK IN+ YIL +
Sbjct: 210 LNSSSSIMALCQPEKKMSKSD---INSKNYILLS 240
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 1.6
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 333 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 425
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 319
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 2.8
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 161 PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEM 18
P LI ++L L +I+FF+ P N+F M+T LT T + N E+
Sbjct: 993 PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 3.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 194 TAAVCXNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNAN 331
+ A+C +L ES+ +NK ++L++I+ K+ N ++ N
Sbjct: 92 SGAICEAIYVLQNFESTDFNKEK-ERLVSIILESNNKSNNELITKN 136
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 288 ISWKKRTLTISSTLMPVMQDERKMSKRKKK 377
+ W+K S M + DE K S +KKK
Sbjct: 915 LEWRKSQQKASEDDMSLSDDEEKQSGKKKK 944
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 61 VFITNELPGCWALKKYIIKNTSGSFQRF 144
V + + C +YIIK T GSF +F
Sbjct: 235 VIVCSSSISCGLDMRYIIKGTRGSFLKF 262
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 6.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 230 KLESSSYNKSNMDQLIAIVNFLE-KKNINYILNANACH 340
KL S+ YN+ I+++ LE K+N + ++ AN CH
Sbjct: 461 KLTSNMYNRVMTKDNISVITLLENKENGSRLIVAN-CH 497
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 143 LQKSNMVNMPEQQSSTETAAVCXNEKLLNKLESSSYNKSNMDQLIAIVNFLEK--KNINY 316
L+ + + ++P T+T + ++++ ES+S + + D + + LEK + +N
Sbjct: 1243 LELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNA 1302
Query: 317 ILN 325
LN
Sbjct: 1303 SLN 1305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,389
Number of Sequences: 5004
Number of extensions: 34050
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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