Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5a16
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 3.6
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 6.3
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 27 6.3
05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818 27 6.3
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 27 6.3
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 6.3
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 6.3
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 27 6.3
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 27 6.3
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 6.3
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 27 6.3
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 27 8.3
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 27 8.3
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 810 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNV 852
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 673 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 715
>05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818
Length = 839
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 707 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 749
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 709 KSAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 751
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 719 KTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNV 761
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 567 KTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNV 609
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 921 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 963
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +3
Query: 63 LHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAKMKSC*INWNR 242
L HK R LG E K K +K+ W S + RP K+C N++
Sbjct: 508 LLHKEAGRRLGCGPGGSNEIKN--HKWFKSVNWKKLDSRQIQPSFRPNVAGKTCIANFDE 565
Query: 243 ALTTNPTWTS 272
T+ P S
Sbjct: 566 CWTSMPVLDS 575
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 938 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 980
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 930 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 972
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 236 ESSSYNKSNMDQLIAIVNFLEKKNINYILNANAC 337
+SSS K LI I + + N Y +N NAC
Sbjct: 1278 DSSSKKKDEKISLIEIEDEMVSLNFEYCINLNAC 1311
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 452 KTAFITPIGTYCYTTMPFGLKNARPTFQRTTRISLGSQLGRNV 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,140
Number of Sequences: 37544
Number of extensions: 199614
Number of successful extensions: 438
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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