Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a16
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    26   9.8  

>AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2D.1 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 230 KLESSSYNKSNMDQLIAIVNFLEKKNINYILNANACHAGRTQNVQTQEEGD 382
           K + S   KS  +  + + NF++ +N    LN NA  AGR  N    +  D
Sbjct: 48  KKKFSRTYKSEAENQLRLQNFVKSRNNVVRLNKNAQKAGRNSNFAVNQFSD 98


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 149 KSNMVNMPEQQSSTETAAVCXNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNA 328
           K N+    EQ   TE  A+  N+KLL  L   + ++  MDQ +   N ++K  + + L +
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELTS 179


>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 KKRTLTISSTLMPVMQDERKMSKRKKKVINNNK 395
           K   +T+SS +  + +  +K+ K  KK++ N K
Sbjct: 289 KNNKMTVSSPVPELSKQAKKLEKEAKKIMENKK 321


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 283 NSN*LVHVGFVVRARFQFIQQLFIXAHGRSFCRRLLLRHVYH 158
           N N    V FV  A     Q +   AHG S+ +  +L ++YH
Sbjct: 239 NENVCYIVSFVAGAFILSSQVVLTTAHGNSYKKEKILANLYH 280


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 62  THLTLRTFVGNYC 24
           +HLT  T+VGNYC
Sbjct: 123 SHLTKTTYVGNYC 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,800,854
Number of Sequences: 27780
Number of extensions: 198047
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)