Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a12
         (369 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060390-1|AAL25429.1|  304|Drosophila melanogaster LD29354p pro...    27   7.7  
AY058574-1|AAL13803.1|  654|Drosophila melanogaster LD26912p pro...    27   7.7  
AE014297-710|AAN14308.1|  304|Drosophila melanogaster CG9636-PC,...    27   7.7  
AE014297-709|AAF54201.1|  453|Drosophila melanogaster CG9636-PA,...    27   7.7  
AE014297-708|AAF54200.1|  462|Drosophila melanogaster CG9636-PB,...    27   7.7  
AE014296-2635|AAF49538.2|  654|Drosophila melanogaster CG5222-PA...    27   7.7  

>AY060390-1|AAL25429.1|  304|Drosophila melanogaster LD29354p
           protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 161 GGCGGRNISLYLVERKEGSPTARSS 235
           GGCGG   S +L E  +G  T  SS
Sbjct: 139 GGCGGNKRSQHLSETSDGGSTDSSS 163


>AY058574-1|AAL13803.1|  654|Drosophila melanogaster LD26912p
           protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 248 PIRALSSVRWGNLPFFPPSKE 186
           P+  + S++W NLP F PS++
Sbjct: 40  PLPFVQSLKWSNLPNFVPSRD 60


>AE014297-710|AAN14308.1|  304|Drosophila melanogaster CG9636-PC,
           isoform C protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 161 GGCGGRNISLYLVERKEGSPTARSS 235
           GGCGG   S +L E  +G  T  SS
Sbjct: 139 GGCGGNKRSQHLSETSDGGSTDSSS 163


>AE014297-709|AAF54201.1|  453|Drosophila melanogaster CG9636-PA,
           isoform A protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 161 GGCGGRNISLYLVERKEGSPTARSS 235
           GGCGG   S +L E  +G  T  SS
Sbjct: 130 GGCGGNKRSQHLSETSDGGSTDSSS 154


>AE014297-708|AAF54200.1|  462|Drosophila melanogaster CG9636-PB,
           isoform B protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 161 GGCGGRNISLYLVERKEGSPTARSS 235
           GGCGG   S +L E  +G  T  SS
Sbjct: 139 GGCGGNKRSQHLSETSDGGSTDSSS 163


>AE014296-2635|AAF49538.2|  654|Drosophila melanogaster CG5222-PA
           protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 248 PIRALSSVRWGNLPFFPPSKE 186
           P+  + S++W NLP F PS++
Sbjct: 40  PLPFVQSLKWSNLPNFVPSRD 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,331,382
Number of Sequences: 53049
Number of extensions: 332132
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 964005624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)