Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a09
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 456 IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 632
           ID   I+Q+  + L  F  ++ T+  K  KM+N  G   +  V  ++ +Y  S   L R 
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240

Query: 633 PCSFADQLLSTFIANNYLC 689
            C   D+LL   + +   C
Sbjct: 241 CCQPLDKLLEWEVTDEEYC 259


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 248 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 99
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 276 LDIFFAIFYNCVPRSNRVILQVA 208
           L++FFA F  C+ RSNR+    A
Sbjct: 142 LELFFACFNTCIFRSNRIFFNSA 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,809
Number of Sequences: 27780
Number of extensions: 346071
Number of successful extensions: 1034
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)