Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5a02
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 70 4e-13
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 42 1e-04
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 30 0.31
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 29 0.72
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.3
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 28 1.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 8.8
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 8.8
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 69.7 bits (163), Expect = 4e-13
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +1
Query: 124 MSETDNVDPQLENFILAETQKQRFQVLVHGLTDTCWDTCMGKPSTRLDSKTEVCIMNCVE 303
+SE++ ++ L FI +E QK + Q +H T TCW C+G +LD E C+ NCVE
Sbjct: 12 LSESEQLE--LSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVE 69
Query: 304 RFIDATTYITKR 339
RF+D +I KR
Sbjct: 70 RFLDCNFHIIKR 81
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 41.5 bits (93), Expect = 1e-04
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 202 LVHGLTDTCWDTCMGKPSTRLDSKTEVCIMNCVERFIDATTYITKRLMS 348
L+ + + C+D C+ +P + D + C+ C+ER++DA +++ +S
Sbjct: 37 LISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSRTYIS 85
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 IMSETDNVDPQLENFILAETQKQRFQVLVHGLTDTCWDTCMGKPSTRLD-SKTE-VCIMN 294
I ++PQ N +AE + + + + L TC C+ D +K E VCI
Sbjct: 6 IGKNNQTINPQ--NIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDR 63
Query: 295 CVERFIDATTYITKRL 342
CV ++ +A +++ +
Sbjct: 64 CVSKYFEANQSLSQHM 79
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 29.1 bits (62), Expect = 0.72
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Frame = +1
Query: 397 LKMFSNIKNFLNRHRRKFFVTGAV-VGGLYVLTSYAQKKLRDWQEKEAKKFFEMTRKKQH 573
LK F N ++R F + ++ V G Y + + ++ E K ++ +
Sbjct: 2 LKSFEKHLNAVSRKCCNFILGSSIPVLGFYCADTCIRNAFMEFMETRNSK----SKYVEA 57
Query: 574 FEGTERTCNQTILSLSKIVSESILSLLNTEEIVQKLQE------NPEDKLALWXQLKITI 735
F + + +S I+ + I+ + I+Q+L+E + E+K+ LW QLK
Sbjct: 58 FNTVQSNGATSAISTFHILKDEIIRRIPLLPIIQELRETRMSEVSAEEKILLWNQLKFMS 117
Query: 736 FTRI 747
R+
Sbjct: 118 LVRM 121
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 502 QKKLRDWQEKEAKKFFEMTRKKQH--FEGTERTCNQTILSLSKIVSESILSLLNTEEIVQ 675
QK+ R + K+A E+ RK QH F+ E+T + L I ES ++ L +E+ Q
Sbjct: 457 QKRRRKNEHKDAGYVTELYRKNQHLLFQVKEKTNIEAFLREQIITLESSIATLR-QELAQ 515
Query: 676 KLQEN 690
+ N
Sbjct: 516 VTEIN 520
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +3
Query: 108 KSTFDYVRNRQRRSATGKLHSRRNTKTTFPGPCSRSHRYLLGHMYGKTINTARLED*SMY 287
KS+ Y+ + A G ++ +R F P R + H Y + T +
Sbjct: 184 KSSVSYINQSSKLLAPGTINIKRLKDANFQAPSHSGIRCMSIHPYFPLLLTCGFDRTLRI 243
Query: 288 YELCGKV 308
Y+L GKV
Sbjct: 244 YQLDGKV 250
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 752 TQILVKIVIFNXSHSANLSSGFSCSFC 672
T IL +I N HS +L S CS C
Sbjct: 419 TAILESSLIINPLHSTSLLSSQPCSLC 445
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -3
Query: 186 FLCFGENEVFQLRIDVVCF*HNQRLILFKNTSYAYIRITVSIFSNQICTLLT 31
FL F +V L I V CF + YA +T SIFSNQ T T
Sbjct: 121 FLAFRSKDVVLLGI-VSCF---ASIFFHAIACYALYLLTKSIFSNQKMTAYT 168
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 605 VWLHVLSVPSKCCFLRVISKNFFASFSCQSLNF 507
VW +++VP +C LR + F+C SL F
Sbjct: 26 VW-PLVTVPRQCICLRWCISKEYHEFTCSSLQF 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,433
Number of Sequences: 5004
Number of extensions: 61672
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -