Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5a01
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 91 2e-20
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 91 2e-20
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 0.78
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 1.4
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 1.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 24 3.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 5.5
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 23 7.3
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 23 7.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 23 7.3
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 23 7.3
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 23 7.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 7.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 7.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 22 9.6
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 22 9.6
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 22 9.6
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 91.1 bits (216), Expect = 2e-20
Identities = 35/59 (59%), Positives = 47/59 (79%)
Frame = +3
Query: 3 IKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 179
IKYDPSIGIYG+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD ++L
Sbjct: 114 IKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 91.1 bits (216), Expect = 2e-20
Identities = 35/59 (59%), Positives = 47/59 (79%)
Frame = +3
Query: 3 IKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 179
IKYDPSIGIYG+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD ++L
Sbjct: 114 IKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 0.78
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -1
Query: 181 LSMIPSYFC-WNHFIASSFVRRW 116
LS I S+ W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 84 RRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*NIS 206
+RRK GK + K+ ++K + + + N KAK N++
Sbjct: 485 QRRKDGKFAKSTKRKKQKSLKPDTENQESSVKNKKAKSNVN 525
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 20 NWNLWTGLLRRTWPARFQRSTQK 88
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 154 WNHFIASSFVRRWGNPTFPVL 92
WN+ I S W P+FP++
Sbjct: 406 WNNLIDDSSPLLWREPSFPLI 426
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 93 KTGKVGFPHRLTKED 137
+TG++GF H L K+D
Sbjct: 1247 RTGQLGFIHHLKKKD 1261
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 12 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFP 116
+ +IG+ G+ V GR G H+ R+ K G P
Sbjct: 472 EDTIGLLGISSIGVKGRHGKKRWHKFRELVKNGVP 506
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 187 LLLSMIPSYFCWNHFIASSF 128
+L +++ S+ CW++ IA F
Sbjct: 186 ILNTIVTSFICWSNAIALGF 205
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 182 IKYDTIIFLLEPLHSIF 132
+ YD I L EP H+I+
Sbjct: 313 LNYDLINLLYEPFHNIY 329
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 187 LLLSMIPSYFCWNHFIASSF 128
+L +++ S+ CW++ IA F
Sbjct: 186 ILNTIVTSFICWSNAIALGF 205
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 22.6 bits (46), Expect = 7.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 4 SSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFPT 120
SS IP L M T +SY ++++ G+ EK FP+
Sbjct: 248 SSLIPDLITMKNTSSSYSLEELTSVQQMGLVYEKIVFPS 286
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 108 GFPHRLTKEDAMKWFQQKYDG 170
G P RL KE WF++ G
Sbjct: 308 GLPSRLEKEIKQLWFERVLHG 328
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 108 PLFLSYAFC 82
PLFLSY FC
Sbjct: 219 PLFLSYQFC 227
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 187 LLLSMIPSYFCWNHFIASSF 128
+L +++ S+ CW++ IA F
Sbjct: 186 ILNTIVTSFICWSNAIALGF 205
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 179 KYDTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVE 69
+Y + F LEPL+ ++ + S +S +T + Y++
Sbjct: 128 EYKKLRFYLEPLNLQWVLMPLETSAYSLVTSTPAYIQ 164
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 187 LLLSMIPSYFCWNHFIASSF 128
+L +++ S+ CW++ IA F
Sbjct: 186 ILNTIVTSFICWSNAIALGF 205
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 95 LTPSVCYVETWPAKY 51
+ PS+C E++PA Y
Sbjct: 786 IMPSICKPESFPANY 800
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 88 GVRQEKWDFPTASQR 132
G + KW+FPTA +R
Sbjct: 84 GKQLYKWEFPTAVKR 98
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = -1
Query: 154 WNHFIASSFVRRWGNPTFPVLRLLC 80
WN ++ + F W F + LC
Sbjct: 904 WNEWVDTDFSYNWARENFLQYKSLC 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,626
Number of Sequences: 5004
Number of extensions: 17470
Number of successful extensions: 53
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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