Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a01
         (208 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              105   7e-24
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_44948| Best HMM Match : RseA_N (HMM E-Value=2.2)                    27   3.1  
SB_9581| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0019)             25   7.2  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  105 bits (251), Expect = 7e-24
 Identities = 43/53 (81%), Positives = 50/53 (94%)
 Frame = +3

Query: 3   IKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 161
           IKYDPSIGIYG+DF+VVLGRPGFN++ R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 109 IKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = -1

Query: 181 LSMIPSYFCWNHFIASSFVRRWGNPTFPVLRLLCATLKP 65
           ++M+ + + ++  +AS  +R W +P  P+++ +    KP
Sbjct: 146 IAMVVTVWLYSFVVASLSLRNWTSPEGPLVKTINGCFKP 184


>SB_44948| Best HMM Match : RseA_N (HMM E-Value=2.2)
          Length = 169

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 KYDTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETW 63
           KY+ I+  +E   S F+  A  K HF C T +    + W
Sbjct: 3   KYEKILHEMESFISFFVGLAQLKKHFLCFTKTEIQNKRW 41


>SB_9581| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0019)
          Length = 573

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 190 ALLLSMIPSYFCWNH 146
           ++LL  +P+ FCW+H
Sbjct: 513 SVLLGSLPNVFCWSH 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,961,134
Number of Sequences: 59808
Number of extensions: 123462
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 47
effective length of database: 14,010,481
effective search space used: 294220101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)