Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a01
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    96   3e-21
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    95   6e-21
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   0.26 
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra...    26   4.2  
Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine...    25   5.6  
Z77739-1|CAB01298.1|   46|Caenorhabditis elegans PP1-like Ser/Th...    25   7.4  
Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinas...    25   7.4  
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    25   9.7  
L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    25   9.7  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    25   9.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 43/64 (67%), Positives = 51/64 (79%)
 Frame = +3

Query: 3   IKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 182
           IKYDPSIGIYG+DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKYDGIIL 
Sbjct: 124 IKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIILP 183

Query: 183 SKAK 194
            K K
Sbjct: 184 PKPK 187


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = +3

Query: 3   IKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 182
           IKYDP IGIYG+DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKYDGIIL 
Sbjct: 124 IKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIILP 183

Query: 183 SKAK 194
            K K
Sbjct: 184 PKPK 187


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 12  DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 134
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 134 FLCEAVGKSHFSCLTP-SVC 78
           F C A+G  H  C TP SVC
Sbjct: 394 FQCTAIGSQHLCCPTPGSVC 413


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 181  LSMIPSYFCWNHFIASSFVR 122
            LS + ++  WNH I SSF++
Sbjct: 2159 LSSLDNFLSWNHPIVSSFIK 2178


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 17  LNWNLWTGLLRRTWP--ARFQRSTQKA*DRKSGI 112
           LNW++  G+ RR+W   A+ Q + Q+A  +  G+
Sbjct: 619 LNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGL 652


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 104 FSCLTPSVCYVETWPAKYDVKVQSI 30
           F C T S  +  TWPA YD+ ++ +
Sbjct: 260 FKCNTTSGAWYNTWPA-YDIDMKEV 283


>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 12
           protein.
          Length = 1022

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 IFYFALLLSMIPSYFCWNHFIASSFVRRWGNPTFPVLRLLCATL 71
           +F+  L+L+ I + F W   IAS+F+  +      V   L A L
Sbjct: 509 LFFGMLVLAAIDAEFAWLEMIASAFMNHFSMKNKAVENRLLAFL 552


>Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 200 ILLCFAIKYDTIIFLLEPLHSI 135
           +LLC+ IKY    FLL   H +
Sbjct: 111 LLLCYKIKYPNNFFLLRGNHEV 132


>Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 200 ILLCFAIKYDTIIFLLEPLHSI 135
           +LLC+ IKY    FLL   H +
Sbjct: 111 LLLCYKIKYPNNFFLLRGNHEV 132


>AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine
           hydroxylase protein.
          Length = 457

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  RRRKTGKVGFPHRLTKEDAMKWFQQKYDGI 173
           +RR   K G P     +D++ WF QK + I
Sbjct: 99  KRRFLFKTGTPKTKQNKDSVPWFPQKINDI 128


>Z77739-1|CAB01298.1|   46|Caenorhabditis elegans PP1-like Ser/Thr
           protein phosphataseprotein.
          Length = 46

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 200 ILLCFAIKYDTIIFLLEPLHSIFLCEAVGKSHFSCL 93
           +L C  I+Y   IFLL   H      +V K +F C+
Sbjct: 9   LLFCLKIRYRDRIFLLRGNHE---TPSVNKVYFKCI 41


>Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical
           protein F43C1.2b protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  TEGVRQEKWDFPTASQRKM 138
           T  VRQ+KW +  +  RKM
Sbjct: 51  TNHVRQQKWQYTRSGHRKM 69


>U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinase
           protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  TEGVRQEKWDFPTASQRKM 138
           T  VRQ+KW +  +  RKM
Sbjct: 51  TNHVRQQKWQYTRSGHRKM 69


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 21  IGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSK 188
           + I G+   V+LG  G   A  +     +G  +   K+D   W       I  +SK
Sbjct: 438 VNIEGVQHVVILGSDGKVFAMGKNTDNALGLGNWTGKDDQQHWLYDTIQEIEFDSK 493


>L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical
           protein C30C11.1 protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 158 LLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSINSN 21
           LL+P+ ++  C A    H S      CY +      ++K + +  N
Sbjct: 74  LLQPIDNLVTCPACSNIHPSDTICDACYAKVHQLTSEIKKKMMQYN 119


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 136 SSFVRRWGNPTFPVLRLLCATLKPGR 59
           SS       P F   +LL A LKPGR
Sbjct: 53  SSITEELATPQFSAEQLLNAVLKPGR 78


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 160 FCWNHFIASSFVRRWGNPTFPVL 92
           F W  F   +F+ R GN  FP++
Sbjct: 71  FFWKFFFILAFIFRTGNFGFPII 93


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 136 SSFVRRWGNPTFPVLRLLCATLKPGR 59
           SS       P F   +LL A LKPGR
Sbjct: 53  SSITEELATPQFSAEQLLNAVLKPGR 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,260,055
Number of Sequences: 27780
Number of extensions: 95705
Number of successful extensions: 240
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)