Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5a01
         (208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   0.88 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   0.88 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   1.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   2.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   2.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   2.7  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   4.7  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   6.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   6.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 0.88
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 202 IFYFALLLSMIPSYFCWNHFIASSFVRRW 116
           +F+F L+L  + S FC      ++ V  W
Sbjct: 379 LFFFMLILIGLDSQFCTVEGFITAAVDEW 407


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 0.88
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 202 IFYFALLLSMIPSYFCWNHFIASSFVRRW 116
           +F+F L+L  + S FC      ++ V  W
Sbjct: 432 LFFFMLILIGLDSQFCTVEGFITAAVDEW 460


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 72  NVAHRRRKTGKVG 110
           NVA R   TGKVG
Sbjct: 923 NVASRMESTGKVG 935


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 121 RWGNPTFPVLRLLCATLKPGR 59
           RW  PT P   LL A    GR
Sbjct: 443 RWTTPTTPHSPLLVAPFGAGR 463


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  RKSGISPPPHKGRCYEVV 151
           R + +SPPP K R  +VV
Sbjct: 898 RGTVVSPPPTKRRTMKVV 915


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  RKSGISPPPHKGRCYEVV 151
           R + +SPPP K R  +VV
Sbjct: 936 RGTVVSPPPTKRRTMKVV 953


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -1

Query: 187 LLLSMIPS--YFCWNHF 143
           LL+S +P   Y+ W+HF
Sbjct: 102 LLISGLPPEIYYIWSHF 118


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 121 RWGNPTFPVLR 89
           +WGNP  P+++
Sbjct: 841 KWGNPNRPIVQ 851


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 3/15 (20%)
 Frame = -3

Query: 98  CLTPSV---CYVETW 63
           C++P +   CY ETW
Sbjct: 104 CMSPPMVINCYYETW 118


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 154 WNHFIASSFVRRWGNPTFPVLRLLCATL 71
           WN    +  +  W +P  P+LR    TL
Sbjct: 530 WNPLTDTVPIHTWIHPWLPLLRNRLDTL 557


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 3/15 (20%)
 Frame = -3

Query: 98  CLTPSV---CYVETW 63
           C++P +   CY ETW
Sbjct: 70  CMSPPMVINCYYETW 84


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 131 LCEAVGKSHFSCLTPSVCYVETWPAKYDVK 42
           +CE V  S  S +T    Y ++ P   D+K
Sbjct: 40  ICERVYCSRNSLMTHIYTYHKSRPGDIDIK 69


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 208 LLIFYFALLLSMIPS 164
           +L+F F ++L +IPS
Sbjct: 14  VLLFSFVVILLIIPS 28


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 208 LLIFYFALLLSMIPS 164
           +L+F F ++L +IPS
Sbjct: 14  VLLFSFVVILLIIPS 28


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 65  WPAKYDVKVQSIN 27
           WP K   K+ SIN
Sbjct: 222 WPKKRVTKMSSIN 234


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 163 YFCWNHFIASSFVR 122
           Y CW+     +FVR
Sbjct: 390 YACWSRDFRRAFVR 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,318
Number of Sequences: 438
Number of extensions: 1163
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)