Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p23
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    37   0.002
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   7.1  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   7.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.4  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 417 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 587
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 588 NGFWAIKYLLVIGGIIGAF 644
           NG W  K  +V+  ++G F
Sbjct: 127 NGLWPFK--IVLWFVLGIF 143


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 243 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 133
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 243 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 133
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 231 LAVLQNKGPIL-HPFLVFISHFV 166
           LA L +  P++ H  ++F+SHFV
Sbjct: 712 LAALSDASPLVRHELVIFLSHFV 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,502
Number of Sequences: 5004
Number of extensions: 51856
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)