Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p23
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 44 8e-05
09_04_0452 - 17710180-17710968 31 0.60
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829... 30 1.8
09_04_0451 - 17707002-17707799 28 5.6
10_08_0842 - 20954712-20957738 28 7.4
09_04_0453 - 17715843-17716634 28 7.4
06_01_1110 - 9137529-9137918,9138011-9138112,9138289-9138381,913... 27 9.7
03_03_0237 + 15706391-15706699 27 9.7
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 27 9.7
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 486 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIGGIIGAFF 647
AV R++ +FF ++A+IM G+K KDPR I +G W K + + FF
Sbjct: 79 AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAKIFCWVVIVFLMFF 132
>09_04_0452 - 17710180-17710968
Length = 262
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 495 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 626
R+T AT + L + +++G+ SKD AG+ NG + + + L+IG
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLIIG 195
>03_06_0331 -
33181757-33181795,33182325-33182453,33182941-33182967,
33183459-33183545,33183827-33183975,33185467-33185521,
33185596-33187584,33188705-33188782
Length = 850
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -2
Query: 448 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAE 269
FPG SP+ + F QN + L +P + ++ S A I+RE++ +
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQP 531
Query: 268 QHSEQAVLPQQHASCA 221
+ Q+ S A
Sbjct: 532 MNLSPPTSEQKEGSTA 547
>09_04_0451 - 17707002-17707799
Length = 265
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 495 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 626
R+T AT + L + +++G+ +SKD AG+ G + + + L +G
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHASKDRPAGVTTGKYWMGFFLTLG 195
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 63 KI*XFISAYNNIKIQILVIWNVNCST*NKHHNQ 161
K+ + A IK++++ ++CS+ ++HHNQ
Sbjct: 420 KVQEVVGAVEGIKVKVIDTPGLSCSSSDQHHNQ 452
>09_04_0453 - 17715843-17716634
Length = 263
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 495 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 626
R T AT + L + +++G+ +SKD AG+ +G + + + L +G
Sbjct: 150 RFTAATLNAVALLTIGAVVLGLHASKDRPAGVTSGKYWMGFFLTLG 195
>06_01_1110 -
9137529-9137918,9138011-9138112,9138289-9138381,
9138465-9138719,9139002-9139258,9139341-9139445,
9139555-9139834,9139932-9140212,9140362-9140482
Length = 627
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 577 ALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPV 428
A+G + P+ ++R K+HVA +L T + A +Q+ + S V
Sbjct: 154 AIGGKRVVAPLQPGKVTRSKKHVAPDVLATREVLVADTQAEIPIQATSEV 203
>03_03_0237 + 15706391-15706699
Length = 102
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 291 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPG 446
N +S+ + A LVL+ + + L+ G+ E+ + ++A D+T G++ G
Sbjct: 4 NKSSNSISIAFFLVLIILASQVMLSHGIPLEMHRRYLLSHAADAT-KGVMEG 54
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 465 DEAVGYLAVYRITFATCLFFLLMALIMI 548
+EA+GY+A + A+ L+ LLM L+++
Sbjct: 633 EEAIGYVAADELIEASFLYLLLMILLVL 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,575
Number of Sequences: 37544
Number of extensions: 307805
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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