Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p23
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 99 1e-21
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 100 2e-21
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 54 7e-08
Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 28 5.0
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 28 5.0
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 28 5.0
Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 99 bits (238), Expect = 1e-21
Identities = 52/119 (43%), Positives = 71/119 (59%)
Frame = +3
Query: 291 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 470
NST++R+MYALML+ T + + L PG+ +L + + + + V+C+
Sbjct: 35 NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEH 86
Query: 471 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIGGIIGAFF 647
A+GY AVYR+ FF L L+M GV SSKD R+ IQNGFW KYLL+ GIIG FF
Sbjct: 87 AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMF-GIIGGFF 144
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 99.5 bits (237), Expect = 2e-21
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Frame = +3
Query: 291 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCD 467
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 468 EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIGGIIGAFF 647
A G+ AVYR+ AT F+LL LIMIGVK SKD R+ IQNGFW KYL++ I+G FF
Sbjct: 86 HATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFF 145
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 54.4 bits (125), Expect = 7e-08
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 291 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 467
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 468 EAVGYLAVYRITFATCLFFLLMALIM 545
A G+ AVYR+ AT F+LL LI+
Sbjct: 86 HATGFQAVYRVCAATASFYLLFILIV 111
>Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 282 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 118
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 208 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical
protein T05A1.1b protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 282 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 118
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 165 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 215
>Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 282 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 118
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 208 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 254 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 352
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 254 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 352
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 254 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 352
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical
protein F20E11.12 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 145 FYVLQFTFQITSICILILLYALINXQIFY 59
F++L + TSICIL++L +L++ Q+F+
Sbjct: 186 FFLLDLDGKYTSICILLMLSSLVS-QMFW 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,629
Number of Sequences: 27780
Number of extensions: 294388
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -