Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p20
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 29 0.41
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 29 0.71
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 1.6
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 2.2
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 27 2.9
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 3.8
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 3.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 5.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.0
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 5.0
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 6.6
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.6
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 8.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.8
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 332 QLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMN 487
QL+ + +K++F+ N S+ + E + C LF+EKL TI KT N
Sbjct: 523 QLQATYENLKSNFSARIFNQLSVHSFFAE--ATCHLFLEKLPTITKTYVYSN 572
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 28.7 bits (61), Expect = 0.71
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 221 HHFIFDAQRIIQCIKEIEGAYG 286
HH+++D+QRII + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 441 NNRQFDINSFTYICIEFIFLKQHAKEFLISFNASRNC 331
N+R+ + F IC+ IF +++ I AS NC
Sbjct: 205 NSREIVLTDFGSICLVPIFASNNSEAIAIQDKASENC 241
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 582 ISQHSFGFKNLSSVDISLQTLHSYKTELSTNKFITLT 472
+++ S KNLS++ L+T +S+ ELS + ITL+
Sbjct: 295 LTKSSSESKNLSTIQSPLKTSNSFFKELSPHSQITLS 331
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.9
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Frame = +2
Query: 230 IFDAQRIIQCIKEIEGAYGVRDRGNVIVFYP--YLKQLRDALKLIKNSFACCFKNINSMQ 403
I DA + I+C E AY R ++ +F P + R AL L + A K Q
Sbjct: 59 INDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQ 118
Query: 404 MYVNELISNCLLFIEKLETI-NKTVKVMNLFVD-NSVLYECNVCKEISTD--ERFLKPKE 571
+ + E + N ++ M++ D + V+ E + KE D ERF + K+
Sbjct: 119 LVKRIRFQEAIHNTEPPSPLANINIEDMDIPSDYDGVILEKQITKEFVEDMKERFCQGKK 178
Query: 572 CCEIRYMQRVLR 607
+++ +LR
Sbjct: 179 -LPLKFAYSILR 189
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 YPYLKQLRDALKLIKNSFACCFKNINSM-QMYVNELISNCLLFIEKLETINKTV 475
Y Y KQ+R+ L + + + F+NI + + LI + L I +L +NK V
Sbjct: 170 YTYPKQVRECLNVYQVLISKGFRNITVLGESAGGTLILSFLYQISELSKLNKVV 223
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 410 VNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEIRY 589
++ L+ +C+ + K + K V+ + DN Y V EI D+ LK + E +Y
Sbjct: 282 IDPLVVDCMCVLWKKSSSKKVVRRLQQRDDNDEKYVYKVLSEILRDD-MLKKQRFDENKY 340
Query: 590 M 592
+
Sbjct: 341 L 341
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 458 TINKTVKVMNLFVDNSVLYECNVCK-EISTDERFLKPKECCEIRYMQRV 601
T N+TV + N+ D ++ CN + + + R+L+ K C + ++ V
Sbjct: 320 TGNRTVYIGNIHADTTIEEICNAVRGGLLHNIRYLQEKHICFVTFVDPV 368
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 425 SNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLK 562
S LF ++ + ++M +++CNV E+ D+RFL+
Sbjct: 837 SGLKLFKLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVIPDQRFLR 882
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 208 VVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKR 86
++ +G+ N GT ++ +I+Y + V F MF++ Y +R
Sbjct: 277 MIFNAILGWNNTGTYGSILS-YIIYWLFVAFIMFLMWYKER 316
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 389 INSMQMYVNELISNCLLFIE-KLETINKTVKV---MNLFVDNSVLYECNVCKEISTDERF 556
+NS ++ L ++ + + +L ++N V+ M+L VD VLY+ V E R+
Sbjct: 503 LNSRSTHLPPLFASLMQHLSCRLNSLNNLVRYIRSMSLDVDRQVLYKLRVMGEKCNSVRY 562
Query: 557 L 559
L
Sbjct: 563 L 563
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 6.6
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 227 FIFDAQRIIQCIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQM 406
F + QRI+ I+ + GV GN YL + A K+ NSF C K+I + +
Sbjct: 170 FAGEQQRIVDEIEYLVD--GVTFSGNSSASR-YLSLIGIAEKMFDNSFRLCLKSIRDVFL 226
Query: 407 YVNELI 424
+ E I
Sbjct: 227 RIFEEI 232
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 547 IRRYFFTNIAFVQNRIVYEQIHNFNSFINSF 455
I R+ F+N+ F++NR+ + INS+
Sbjct: 227 IDRFTFSNLEFLENRVDSKSKLTMQDLINSY 257
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 503 SVLYECNVCKEI 538
S LYECN C+EI
Sbjct: 179 SNLYECNACREI 190
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 138 SILYLYISKCLSSIIANAAERTPHCTFASICMSA 37
SI+ +Y KC+ + I+ A C F ++ +SA
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSA 2810
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,837
Number of Sequences: 5004
Number of extensions: 52095
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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