Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p20
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    33   0.18 
11_04_0440 - 17772550-17772567,17772644-17772766,17772954-177732...    29   3.0  
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772...    28   5.2  
07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784...    28   6.8  

>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = +2

Query: 257  CIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCL 436
            C+ E+E  + +   G+V      + Q   ALK       CC KN    Q+ V +L S  L
Sbjct: 1527 CLCEVEDPFKLESCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRS--L 1584

Query: 437  LFIEKLETI 463
            L  EKLE +
Sbjct: 1585 LSSEKLEEL 1593


>11_04_0440 -
           17772550-17772567,17772644-17772766,17772954-17773239,
           17773320-17773455,17773787-17773998,17775213-17775574,
           17775670-17775700,17775807-17775868
          Length = 409

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = +2

Query: 308 IVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMN 487
           +V+ P L +    ++L+++ + C  KN N +    N+       FI+KLE +NK+ +  +
Sbjct: 272 LVWEPGLWESSTKVQLVRDVYWCYNKNKNRISTLKNKTALGLKSFIDKLE-VNKS-RAPD 329

Query: 488 LFVDNSVLYE 517
             +++  LYE
Sbjct: 330 KQINDDNLYE 339


>07_03_1528 +
           27474973-27475289,27476890-27477073,27477081-27477261,
           27477270-27478206,27478384-27479035,27479352-27479798
          Length = 905

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 SMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
           ++ M  +E + NCL+  ++ E INK   ++ +  DN  +Y
Sbjct: 687 ALAMLASENVDNCLVMSKEPEFINKLRNMILIHDDNKYIY 726


>07_03_1511 +
           27276736-27276998,27277090-27277267,27277740-27278436,
           27278674-27278756,27278790-27279293,27279504-27279920
          Length = 713

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 395 SMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
           ++ M  +E + NCL+ +++ E INK +K M L  D   +Y
Sbjct: 504 ALAMLASENVHNCLVMLKEPEFINK-LKNMILIHDGKCIY 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,204
Number of Sequences: 37544
Number of extensions: 291681
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)