Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p20
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro...    31   2.5  
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r...    31   2.5  
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r...    31   2.5  
BC043409-1|AAH43409.1|  422|Homo sapiens KCNH5 protein protein.        31   4.3  

>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
          Length = 3801

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE--- 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E   
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSEYKL 2495

Query: 572  -CCEIRYMQRVLRYH 613
              C+I+ +   +  H
Sbjct: 2496 LACDIQQLFIAVTIH 2510


>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE--- 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E   
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSEYKL 2495

Query: 572  -CCEIRYMQRVLRYH 613
              C+I+ +   +  H
Sbjct: 2496 LACDIQQLFIAVTIH 2510


>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
            regulator protein.
          Length = 3801

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +2

Query: 404  MYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYE-CNVCKEISTDERFLKPKE--- 571
            +Y N L+ N LL +  L+ +N   KV ++ +DN +LY  CN    ++  E+ +   E   
Sbjct: 2438 LYDNILLHNALLLL--LQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPMSEYKL 2495

Query: 572  -CCEIRYMQRVLRYH 613
              C+I+ +   +  H
Sbjct: 2496 LACDIQQLFIAVTIH 2510


>BC043409-1|AAH43409.1|  422|Homo sapiens KCNH5 protein protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 193 TVGFGNVGTLIIVIKKFILYSILV---HFQMFIVNYC 92
           T+GFGN+     V K F +  ++V   +F  FI NYC
Sbjct: 374 TIGFGNIAPTTDVEKMFSVAMMMVGCKYFNFFIENYC 410


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,843,193
Number of Sequences: 237096
Number of extensions: 1639767
Number of successful extensions: 4122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4122
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)