Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p20
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    33   0.12 
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    33   0.12 
U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical p...    32   0.38 
U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine rece...    30   1.5  
L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    29   2.0  
U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protei...    28   6.1  
Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEFLI 355
           LS   FIT+ + L++  FSIN     I SF Y+     F+   + EFL+
Sbjct: 417 LSKFNFITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLV 465


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQHAKEFLI 355
           LS   FIT+ + L++  FSIN     I SF Y+     F+   + EFL+
Sbjct: 437 LSKFNFITIAISLVLGIFSINATYLHIFSFIYLQKNGYFIDGTSAEFLV 485


>U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical
           protein K09H11.11 protein.
          Length = 121

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 354 SFNASRNCFKYG*NTITLPRSRTPYAP 274
           +FN  R CFKY   +I+ PRSR P+ P
Sbjct: 70  AFNRLRKCFKY--RSISPPRSRAPFPP 94


>U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 33 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 501 LSTNKFITLTVLLIVSSFSINNRQFDINSFTYICI 397
           LS N FI+L + +I   FSI  ++F  N+   +CI
Sbjct: 118 LSLNSFISLMLSMIYRYFSIRFKRFTANTSIILCI 152


>L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical
           protein C29E4.10 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 338 RDALKLIKNSFACCFKNINSMQMYVNEL-ISNCLLFIEKLETINKTVKVMNLFVDNSVLY 514
           R   K+ + S + C  +I +    + ++ + NC     ++E  NK V + + FVD S++ 
Sbjct: 388 RAVQKVTRPSISWCTSHIRTPYAVMADIEVINCRGIFVEIEFSNKKVTIFSDFVDRSIIA 447

Query: 515 ECNVCKEI 538
           E    +++
Sbjct: 448 EFKARRKV 455


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
 Frame = +2

Query: 365 SFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYEC--NVCKEI 538
           ++A  F+N+ S  + + + I N  LF+E +   +   K +NL    SV+Y+      +++
Sbjct: 166 NYAISFENVLS-SLKLLDSIKNMSLFLEPVYQESAFRKELNLSTLTSVIYQALNQFSEQL 224

Query: 539 STDERFLKPKECCE--IRYMQRVL 604
            T  +++   +  E  ++Y+QR++
Sbjct: 225 QTIRKYVSNTKASESDLKYIQRLI 248


>U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protein
           169 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 214 RTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFI---VNYCK 89
           R  ++G TV F    TL+ VI   ILY+ + H Q  +   V++C+
Sbjct: 16  RVALVGVTVSFA--ATLVCVIAAPILYNYMQHMQSVMQSEVDFCR 58


>Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 561 FKNLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFL 382
           FK L    IS + LH  KT+L + K +T T++LI+    +      +N F      +IFL
Sbjct: 226 FKLLQKRKISSE-LHR-KTDLKSEKVLTATMILILLPVVVPATLSFVNLFAPSAYPYIFL 283

Query: 381 KQ 376
            +
Sbjct: 284 SR 285


>Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 561 FKNLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFL 382
           FK L    IS + LH  KT+L + K +T T++LI+    +      +N F      +IFL
Sbjct: 226 FKLLQKRKISSE-LHR-KTDLKSEKVLTATMILILLPVVVPATLSFVNLFAPSAYPYIFL 283

Query: 381 KQ 376
            +
Sbjct: 284 SR 285


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 443 IEKLETINKTVKVMNLFVDNSVLYECNVCKEI-STDERF 556
           +EKLE IN T K    F      + CN+ + + ST ++F
Sbjct: 116 VEKLENINLTNKFKKFFEKRFSKFNCNLAQNLYSTFKKF 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,684
Number of Sequences: 27780
Number of extensions: 300064
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)