Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p19
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.29 
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    26   6.3  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   6.3  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -3

Query: 508 ERTLASDK*RPRRMLYSPLPKLCSLLNRQRSEGIEPSSLQEQRGQALSGLQYICSRVSRA 329
           E + A+ K  P     SP P + +  +R+RS  + PS +   +      L+   + V   
Sbjct: 255 EHSPATSKHEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESF 314

Query: 328 SIRV*NVESPVPADI 284
           S      ++P+P D+
Sbjct: 315 SKESEKDQTPIPEDV 329


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 529 LSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFS 702
           L R    +   VD +RLK  S+ +D  +    S+   PG  +  +    ID+  +  S
Sbjct: 350 LGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPGWEEKLAAAFKIDLKGDETS 407


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 595 GVDPYDLSIISQNDCPGLPDGASEG 669
           GV  YD + I   D PG+ +GAS+G
Sbjct: 102 GVLEYDGAEIQMLDLPGIIEGASQG 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,633
Number of Sequences: 5004
Number of extensions: 62058
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)