Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p19
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6a protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 414 RESNLHPCRNSGVRHCQDSSI 352
           R+SN HPCR+  +R C ++ +
Sbjct: 44  RQSNAHPCRSCRIRKCYEAGM 64


>U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical
           protein F08F8.10a protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 217 IQKTSTASHCITYNFSRTDEPGQYQLEQDSQHFILGLTPLKHDYKYTGVLTVPDPAVPAR 396
           +QK        T   +  D+ G+ Q   + +     LT  +H Y+Y G   + D    AR
Sbjct: 110 LQKVKRKKGATTEESTDIDQGGEEQYYDEDEEIEFNLTGEQHKYQYLGYDRMNDN--KAR 167

Query: 397 MKVRFPLSVAGSASYTVLATD-YTTY 471
            K    +S  G    T+  ++ Y TY
Sbjct: 168 KKAAKLISYPGYTGSTLNTSNVYQTY 193


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 343 DYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDY 462
           DY + G    P P  P+ + VRFP+S A +     L   Y
Sbjct: 192 DYLFDGGFDFPIPLAPSGVGVRFPMSGAVNVGTDPLLITY 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,680
Number of Sequences: 27780
Number of extensions: 356530
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)