Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p15
         (271 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   0.77 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   5.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   5.4  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 0.77
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 LEVVIITNSDGDHDGYLELTAAAKIMSPFISN 197
           ++V+     DG H GY++  A A +  P +++
Sbjct: 1   MDVLQKNYDDGIHPGYMDGGAGAGLYEPHVAH 32


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 269 FFLIFIVFNQFVRW 228
           FFL  I F  F+ W
Sbjct: 299 FFLCLIPFRVFILW 312


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 85  YMKLCVFDVDWASVF 41
           + ++C F  DW  VF
Sbjct: 296 FNEICEFTGDWTRVF 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,834
Number of Sequences: 336
Number of extensions: 1427
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4485306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)